Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J07
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.68 
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         29   2.1  
SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   29   2.1  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   2.1  
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         27   4.8  
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 27   4.8  
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   4.8  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   6.3  
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  27   6.3  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_48264| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4)                      27   6.3  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 147 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQ 308
           +P DGN     IAN D     PSN P  ++  +    A V+     +PP A RQ
Sbjct: 87  IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAYRQ 135


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 VIANPDPFFSQP-SNGPSGNYEPISTGPAY 263
           VIA PDP  S+P +NG  G   PIS+G  Y
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSGSDY 285


>SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +3

Query: 99  NPDY-NPGQVHVVDNSGVP-SDG-NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVD 269
           NP+Y NPG  + + +     S G  + H  I NP P++        G  +P  TGP  + 
Sbjct: 20  NPEYKNPGNKNGIRHPREENSHGIRNSHTRIRNPKPYWKTCHGAIRGIQQPDCTGPEMIP 79

Query: 270 FNHPNYPPQAI--RQPSRPG 323
                  P+ I    P+ PG
Sbjct: 80  GPETIPGPETIPKSSPTDPG 99


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 VIANPDPFFSQP-SNGPSGNYEPISTGPAY 263
           VIA PDP  S+P +NG  G   PIS+G  Y
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSGSDY 81


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 VIANPDPFFSQP-SNGPSGNYEPISTGPAY 263
           VIA PDP  S+P +NG  G   PIS+G  Y
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSGSDY 436


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +3

Query: 204 SQPSNGPSGNYEPI-STGPAYVD----FNHPNYPPQAIRQPS 314
           +QP   P GNY P  +  PAY      +N   YPP  +  PS
Sbjct: 165 AQPGFAPPGNYPPPPAPPPAYPPVTQGYNMSQYPPPDVAPPS 206


>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +3

Query: 180 IANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQP 311
           I  P P    P+  PS  Y   S  P Y+  +HP      I QP
Sbjct: 81  IPTPSPKPGYPTPSPSPRYPTPSPNPGYL-HHHPTLDTYTITQP 123


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +3

Query: 156 DGNSDHVVIANPDPFFSQPSNGPSGN--YEPISTGPAYVDFN-HPNYPPQAIR 305
           D    H ++   +  + Q     +GN  Y  I      VD N HP YPP+ IR
Sbjct: 41  DNTIFHRIVKGGENIYGQSGFKVTGNTIYNMIKMADMEVDDNDHPLYPPKVIR 93


>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 84  HVVDHNPDYNPGQVHVVDNSGVPS 155
           +V+D NP ++P ++H+ D  GVPS
Sbjct: 183 NVLDLNPSFHPAEIHLRD-IGVPS 205


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 204 SQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRP 320
           S PS+    +  P    P+Y  + HP +P    + PS P
Sbjct: 107 SYPSSHIQASLLPHIQHPSYPTYKHPPFPHPTYKHPSYP 145


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +3

Query: 75  NRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPIS-T 251
           N ++ V H PD +P  VH  DN       N+ H     P    + P N PS  + P +  
Sbjct: 618 NHLNTV-HTPDNHPSNVHTPDN-----HLNTVHTPDNQPSTVHT-PDNQPSNVHTPDNHL 670

Query: 252 GPAYVDFNHPN 284
              +   NHP+
Sbjct: 671 NTVHTPDNHPS 681


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 55   YWPW--LPQTECTWSIITLIIIQGRFTWWTIVVFHRTAIV 168
            YW W  L  + C+W+ I L  ++      T++ +H+   V
Sbjct: 1296 YWSWVELVLSGCSWTSIVLYFVRFGINKSTVLTYHKDTSV 1335


>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 129 VVDNSGVPSDGNSDHVVIANPD-PFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIR 305
           +VD +   SD N+  +   +P  P   + +  P  +  PI   P +   ++P YPP +  
Sbjct: 88  LVDIASYDSDNNNTPLSAGSPSAPIIKKNTAIPVEDKYPI-IAPHHHPHHYPTYPPSSSP 146

Query: 306 QPSRPGV 326
             S P V
Sbjct: 147 SSSFPSV 153


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 PGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 209
           P     VD+SGV  D  S  +V A  +P FSQ
Sbjct: 155 PLHSEAVDSSGVAGDQRSSLLVSATLNPLFSQ 186


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 PGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 209
           P     VD+SGV  D  S  +V A  +P FSQ
Sbjct: 84  PLHSEAVDSSGVAGDQRSSLLVSATLNPLFSQ 115


>SB_48264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 86  VHSVCGSHGQYGEEEKRESFHCR 18
           +HS  GSH +   E  +ESFH +
Sbjct: 65  IHSNNGSHARLAREPSKESFHSK 87


>SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4)
          Length = 159

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 210 PSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRPGVGR 332
           P NGP     P   GP Y   N P YPP  +  P  P V +
Sbjct: 6   PVNGP---VYPSVNGPVYPSVNGPVYPP--VNGPVYPPVNK 41



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 216 NGPSGNYEPISTGPAYVDFNHPNYPP 293
           NGP   Y P++ GP Y   N P YPP
Sbjct: 24  NGPV--YPPVN-GPVYPPVNKPVYPP 46


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 342  ETFTFPPPGERVVVSP 295
            ET  +PP GE++V SP
Sbjct: 985  ETIVYPPSGEKIVYSP 1000


>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 189 PDPFFSQPSNGPSGN--YEPISTGPAYVDFNHPNYPPQAIRQPSR 317
           P+P   QP N PSG    + +++ P   +   P  P  A ++ SR
Sbjct: 277 PNPAIPQPPNPPSGGQPQQVVTSQPLNQEVPQPTKPLPASKEASR 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,720,351
Number of Sequences: 59808
Number of extensions: 314034
Number of successful extensions: 852
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)