Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J07
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 31 0.32
At3g60230.1 68416.m06731 hypothetical protein 29 1.3
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 28 2.2
At4g28690.1 68417.m04099 expressed protein 27 3.9
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ... 27 5.2
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 27 5.2
At5g02480.1 68418.m00181 expressed protein p 27 6.8
At2g15520.1 68415.m01776 zinc finger protein, putative strong si... 27 6.8
At4g22740.2 68417.m03281 glycine-rich protein 26 9.0
At4g22740.1 68417.m03280 glycine-rich protein 26 9.0
At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C... 26 9.0
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to... 26 9.0
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 26 9.0
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 26 9.0
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 26 9.0
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 26 9.0
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 26 9.0
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 177 VIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRPG 323
++A P P+ P+ GP P+S+ PA+ N+P +P PG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPG 293
>At3g60230.1 68416.m06731 hypothetical protein
Length = 207
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +3
Query: 201 FSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRPGVG 329
F +P N G ++ P NH N P R PGVG
Sbjct: 67 FKKPGNAQGGGQPRVNLPPVNHPNNHNNGPNAHSRSQGEPGVG 109
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 99 NPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNH 278
NP + + D+S P+ + V + NP S P N P + P S ++
Sbjct: 101 NPPESSSNPNPPDSSSNPNSNPNPPVTVPNPPESSSNP-NPPDSSSNPNSNPNPPESSSN 159
Query: 279 PNYPPQAIRQP 311
PN PP + P
Sbjct: 160 PN-PPVTVPNP 169
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 27.5 bits (58), Expect = 3.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +3
Query: 90 VDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNG---PSGNYEPISTG 254
V NP P + + N SG + S VV +NP +PSNG P + + IS G
Sbjct: 235 VQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQG 294
Query: 255 --PAY 263
P Y
Sbjct: 295 LQPTY 299
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase) [Alfalfa] SWISS-PROT:P04078
Length = 356
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 PDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAI-RQPSRPG 323
P P + PS P NY+ STG A D + PQAI + P R G
Sbjct: 41 PGPV-TDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRG 85
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/69 (23%), Positives = 27/69 (39%)
Frame = +3
Query: 93 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDF 272
D PD + +N V + + + A +P +NG N EP + G +
Sbjct: 769 DAEPDRMEDHQELPENHNVETKTDGEEQEAAK-EPTAESKTNGEEPNAEPETDGKEHKSL 827
Query: 273 NHPNYPPQA 299
PN P++
Sbjct: 828 KEPNAEPKS 836
>At5g02480.1 68418.m00181 expressed protein p
Length = 508
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 254 TGVRRFQSSQLSTPGDTTTLSPGGGKVN 337
+G+ ++ S+ GD++ SPGGG +N
Sbjct: 302 SGLHLTSNASFSSNGDSSDQSPGGGVIN 329
>At2g15520.1 68415.m01776 zinc finger protein, putative strong
similarity to zinc finger protein [Arabidopsis thaliana]
GI:976277
Length = 483
Score = 26.6 bits (56), Expect = 6.8
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +3
Query: 87 VVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYV 266
+ D P+ N + V ++G S +A PF P+ G +E STG
Sbjct: 357 IEDSQPERNTSWLREPVKPFVLNEGGS---FLALSQPFTDSPTVYSPGLFETGSTGTFQK 413
Query: 267 DFNHPNYPPQAIRQP 311
N PP+ R+P
Sbjct: 414 KAKQRNRPPKHARKP 428
>At4g22740.2 68417.m03281 glycine-rich protein
Length = 356
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 192 DPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRP 320
DPFF+QP G G ++ GP+ F + PQ + ++P
Sbjct: 59 DPFFTQPFGG--GMFQSNFFGPSMNPFAEMHRLPQGFIENNQP 99
>At4g22740.1 68417.m03280 glycine-rich protein
Length = 356
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 192 DPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRP 320
DPFF+QP G G ++ GP+ F + PQ + ++P
Sbjct: 59 DPFFTQPFGG--GMFQSNFFGPSMNPFAEMHRLPQGFIENNQP 99
>At3g23130.1 68416.m02915 superman protein (SUP) / zinc finger (C2H2
type) family protein identical to superman protein
GB:S60325 from [Arabidopsis thaliana]; contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 204
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 150 PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPS 314
PS ++ NP+ +S +N P ++ P++ P + P Y IR S
Sbjct: 82 PSSSSTPSPPYPNPNYSYSTMANSPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLS 136
>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 354
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 PDPFFSQPSNGPSGNYEPISTGPAYVDFNHPNYPPQAI-RQPSRPG 323
P P + PS P NY+ STG A + + PQAI + P R G
Sbjct: 41 PGPV-TDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKG 85
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +3
Query: 180 IANPDPFFSQ---PSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRPGV 326
+ANPDP PSN P E +T + +D PP S P +
Sbjct: 510 VANPDPASQNVQPPSNSPGFPQEQFATSQSGIDILAGILPPSGPPVQSGPSI 561
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +3
Query: 180 IANPDPFFSQ---PSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRPGV 326
+ANPDP PSN P E +T + +D PP S P +
Sbjct: 510 VANPDPASQNVQPPSNSPGFPQEQFATSQSGIDILAGILPPSGPPVQSGPSI 561
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +3
Query: 180 IANPDPFFSQ---PSNGPSGNYEPISTGPAYVDFNHPNYPPQAIRQPSRPGV 326
+ANPDP PSN P E +T + +D PP S P +
Sbjct: 510 VANPDPASQNVQPPSNSPGFPQEQFATSQSGIDILAGILPPSGPPVQSGPSI 561
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 26.2 bits (55), Expect = 9.0
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +3
Query: 189 PDPFFSQPSNGPSGNYEPISTGPAYVDFNH-PNYPPQAIRQPSRPGVGR*MSHKDXRFSN 365
PD +Q +GPS N P GP N PN P +P P R R N
Sbjct: 432 PDQAPNQQPSGPSPNRHPDRQGPPPRFQNQAPNQQPTGRFEPQPPNPPRAPPRPQTRLPN 491
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +3
Query: 141 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAYVDFNHP 281
SG SD + F ++G SG Y P GP V P
Sbjct: 4 SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,524,542
Number of Sequences: 28952
Number of extensions: 206443
Number of successful extensions: 595
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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