Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_J06
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 53 1e-07
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 53 1e-07
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 53 1e-07
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 50 1e-06
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 50 1e-06
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 48 4e-06
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 48 4e-06
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 47 1e-05
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 46 1e-05
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 44 7e-05
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr... 44 7e-05
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr... 44 7e-05
At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family pr... 44 9e-05
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 43 1e-04
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 42 3e-04
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 42 3e-04
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 42 4e-04
At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family pr... 41 5e-04
At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family pr... 41 5e-04
At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family pr... 41 6e-04
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 40 0.001
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 40 0.001
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 40 0.001
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 39 0.002
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 39 0.002
At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family pr... 39 0.002
At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr... 39 0.002
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr... 39 0.003
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 39 0.003
At4g27120.2 68417.m03898 expressed protein 39 0.003
At4g27120.1 68417.m03897 expressed protein 39 0.003
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr... 38 0.003
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 38 0.003
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 38 0.004
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 38 0.004
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 38 0.006
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr... 37 0.008
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 37 0.008
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 37 0.008
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 37 0.010
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 37 0.010
At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family pr... 36 0.013
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 36 0.018
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 35 0.041
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 35 0.041
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 35 0.041
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 34 0.054
At4g01720.1 68417.m00223 WRKY family transcription factor simila... 34 0.072
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 33 0.17
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 33 0.17
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 32 0.22
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 32 0.29
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 31 0.38
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 0.38
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr... 31 0.38
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 31 0.38
At3g28770.1 68416.m03591 expressed protein 31 0.51
At3g20640.1 68416.m02612 ethylene-responsive protein -related co... 31 0.51
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 31 0.51
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 31 0.51
At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family pr... 31 0.51
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 31 0.51
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr... 30 0.89
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 30 0.89
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 30 0.89
At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family pr... 30 0.89
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr... 30 0.89
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 30 0.89
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 30 0.89
At2g44200.1 68415.m05500 expressed protein 30 0.89
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p... 30 0.89
At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family pr... 30 0.89
At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family pr... 30 0.89
At3g29075.1 68416.m03637 glycine-rich protein 29 1.5
At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family pr... 29 1.5
At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family pr... 29 1.5
At5g63720.1 68418.m07998 hypothetical protein 29 2.0
At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family pr... 29 2.0
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 29 2.0
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 29 2.0
At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing... 29 2.0
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 29 2.0
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 29 2.0
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 29 2.7
At3g30725.1 68416.m03909 expressed protein ; expression supporte... 29 2.7
At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family pr... 29 2.7
At2g20310.1 68415.m02372 expressed protein 29 2.7
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 29 2.7
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 2.7
At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmoti... 28 3.6
At2g31730.1 68415.m03874 ethylene-responsive protein, putative s... 28 3.6
At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family pr... 28 3.6
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 28 3.6
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 28 3.6
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 4.7
At3g21480.1 68416.m02710 transcription activation domain-interac... 28 4.7
At1g17820.1 68414.m02206 expressed protein 28 4.7
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein... 27 6.2
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr... 27 6.2
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr... 27 6.2
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 27 6.2
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 27 6.2
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 27 6.2
At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein gar2... 27 6.2
At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein gar2... 27 6.2
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 6.2
At1g57680.2 68414.m06546 expressed protein 27 6.2
At1g57680.1 68414.m06545 expressed protein 27 6.2
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 27 6.2
At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family pr... 27 6.2
At1g14687.1 68414.m01755 zinc finger homeobox family protein / Z... 27 6.2
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr... 27 6.2
At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family pr... 27 8.3
At4g29550.1 68417.m04214 expressed protein contains Pfam profile... 27 8.3
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila... 27 8.3
At3g29763.1 68416.m03760 hypothetical protein 27 8.3
At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family pr... 27 8.3
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 8.3
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 27 8.3
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot... 27 8.3
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGY 361
GS + + H + S EDE++ S++S K R A H Q+E+KRRD I +
Sbjct: 174 GSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRM 233
Query: 362 DSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+LQ+LVP +TD KA++L + I+Y++ L Q
Sbjct: 234 KTLQKLVPNSSKTD-------KASMLDEVIEYLKQLQAQ 265
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +2
Query: 242 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 412
T +D + NK+S S RR E H +E++RRD I + +LQEL+P C +TD
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 413 YKHSKAAVLQKSIDYIQYLLQQ 478
KA++L ++IDY++ L Q
Sbjct: 291 ----KASILDEAIDYLKSLQMQ 308
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +2
Query: 242 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 412
T +D + NK+S S RR E H +E++RRD I + +LQEL+P C +TD
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTD--- 290
Query: 413 YKHSKAAVLQKSIDYIQYLLQQ 478
KA++L ++IDY++ L Q
Sbjct: 291 ----KASILDEAIDYLKSLQMQ 308
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +2
Query: 269 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKS 448
N+ S + + R E H +E++RRD I + +LQEL+P C +TD KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 449 IDYIQYLLQQ 478
IDY++ L Q
Sbjct: 300 IDYLKSLQLQ 309
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +2
Query: 269 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKS 448
N+ S + + R E H +E++RRD I + +LQEL+P C +TD KA++L ++
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTD-------KASILDEA 299
Query: 449 IDYIQYLLQQ 478
IDY++ L Q
Sbjct: 300 IDYLKSLQLQ 309
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 48.0 bits (109), Expect = 4e-06
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Frame = +2
Query: 197 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 352
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 353 KGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ +LQEL+P C + D KA++L ++I+Y++ L Q
Sbjct: 361 EKMRALQELIPNCNKVD-------KASMLDEAIEYLKSLQLQ 395
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 48.0 bits (109), Expect = 4e-06
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Frame = +2
Query: 197 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 352
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 353 KGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ +LQEL+P C + D KA++L ++I+Y++ L Q
Sbjct: 361 EKMRALQELIPNCNKVD-------KASMLDEAIEYLKSLQLQ 395
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +2
Query: 221 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 400
PSS+ + D ++KASA+ R H+ EQ+RR I + + L+EL+P +Q
Sbjct: 25 PSSNTTVHSNRDSKENDKASAI------RSKHSVTEQRRRSKINERFQILRELIPNSEQ- 77
Query: 401 DASGYKHSKAAVLQKSIDYIQYLLQQ 478
K A+ L + IDY+QYL ++
Sbjct: 78 -----KRDTASFLLEVIDYVQYLQEK 98
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +2
Query: 194 GSIQNIHQTPSSSNQNTEDEDDSGDNKASA---LSFKERRREAHTQAEQKRRDAIKKGYD 364
G I+ T S+N + E +D A ++ ++R E H E+KRRD K
Sbjct: 191 GDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMR 250
Query: 365 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+LQ+L+P C YK KA++L ++I Y++ L Q
Sbjct: 251 ALQDLLPNC-------YKDDKASLLDEAIKYMRTLQLQ 281
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 400
+++++ +++ + S S K R E H +E+KRRD I + +LQEL+P C ++
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 317
Query: 401 DASGYKHSKAAVLQKSIDYIQYLLQQ 478
D KA++L ++I+Y++ L Q
Sbjct: 318 D-------KASMLDEAIEYMKSLQLQ 336
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQELVPTCQQT 400
+++++ +++ + S S K R E H +E+KRRD I + +LQEL+P C ++
Sbjct: 187 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS 246
Query: 401 DASGYKHSKAAVLQKSIDYIQYLLQQ 478
D KA++L ++I+Y++ L Q
Sbjct: 247 D-------KASMLDEAIEYMKSLQLQ 265
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 44.0 bits (99), Expect = 7e-05
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASA---------LSFKERRREA---HTQAE 328
GS G ++ SS E D GDNK A + + RR +A H+ AE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206
Query: 329 QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ RR+ I + LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 207 RARREKISERMTLLQDLVPGCNRIT------GKAVMLDEIINYVQSLQRQ 250
>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 337
Score = 44.0 bits (99), Expect = 7e-05
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +2
Query: 206 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 373
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 374 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++VP C + KA +L + I+Y+Q L +Q
Sbjct: 216 DIVPGCNKVT------GKAGMLDEIINYVQCLQRQ 244
>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 335
Score = 44.0 bits (99), Expect = 7e-05
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +2
Query: 206 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 373
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 374 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++VP C + KA +L + I+Y+Q L +Q
Sbjct: 216 DIVPGCNKVT------GKAGMLDEIINYVQCLQRQ 244
>At4g30980.1 68417.m04397 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 310
Score = 43.6 bits (98), Expect = 9e-05
Identities = 30/98 (30%), Positives = 50/98 (51%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 364
GS G Q Q+ ++++ T K + + + + H+ AE+ RR+ I +
Sbjct: 100 GSGGQTQT--QSQATASATTGGATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMK 157
Query: 365 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
SLQELVP +TD KA++L + IDY+++L Q
Sbjct: 158 SLQELVPNGNKTD-------KASMLDEIIDYVKFLQLQ 188
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +2
Query: 203 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 370
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 371 QELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
Q+LVP C + KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDKVT------GKAVMLDEIINYVQSL 279
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = +2
Query: 203 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 370
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 371 QELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
Q+LVP C + KA +L + I+Y+Q L
Sbjct: 253 QDLVPGCDKVT------GKAVMLDEIINYVQSL 279
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +2
Query: 227 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 397
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQ++VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 398 TDASGYKHSKAAVLQKSIDYIQYLLQQ 478
KA +L + I+Y+Q L QQ
Sbjct: 180 VT------GKAGMLDEIINYVQSLQQQ 200
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +2
Query: 227 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 397
S+ NTE + K + + RR EA H+ AE+ RR+ I K LQ++VP C +
Sbjct: 122 SNMSNTETSSEI--QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 398 TDASGYKHSKAAVLQKSIDYIQYLLQQ 478
KA +L + I+Y+Q L QQ
Sbjct: 180 VT------GKAGMLDEIINYVQSLQQQ 200
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 41.5 bits (93), Expect = 4e-04
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Frame = +2
Query: 176 SRCGSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDA 346
S G+SG+ + + S + DE S + S+ S +R R E H +E++RR
Sbjct: 153 SSVGASGNETDEYDCESEEGGEAVVDEAPSSKSGPSSRSSSKRCRAAEVHNLSEKRRRSR 212
Query: 347 IKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
I + +LQ L+P +TD KA++L ++I+Y++ L Q
Sbjct: 213 INEKMKALQSLIPNSNKTD-------KASMLDEAIEYLKQLQLQ 249
>At2g24260.1 68415.m02898 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 350
Score = 41.1 bits (92), Expect = 5e-04
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Frame = +2
Query: 185 GSSGSIQNIH-QTPSSSNQNTEDEDDSGDNKA----SALSFKERRREA---HTQAEQKRR 340
GS G + N QT + + +G A S + RR +A H+ AE+ RR
Sbjct: 98 GSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRR 157
Query: 341 DAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ I + +LQELVP +TD KA++L + IDY+++L Q
Sbjct: 158 ERIAERMKALQELVPNGNKTD-------KASMLDEIIDYVKFLQLQ 196
>At1g10120.1 68414.m01141 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 301
Score = 41.1 bits (92), Expect = 5e-04
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKK 355
G+ S + S N E K + + + RR +A H+ AE+ RR+ I +
Sbjct: 106 GNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISE 165
Query: 356 GYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
LQELVP C + KA +L + I+Y+Q L QQ
Sbjct: 166 RMRLLQELVPGCNKIT------GKAVMLDEIINYVQSLQQQ 200
>At1g03040.1 68414.m00276 basic helix-loop-helix (bHLH) family
protein component of the pyruvate dehydrogenase complex
E3, contains PF|00010 helix-loop-helix DNA-binding
domain. ESTs gb|T45640 and gb|T22783 come from this gene
Length = 302
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ H+ AE+ RR+ I + SLQELVPT +TD +AA++ + +DY+++L Q
Sbjct: 153 DPHSIAERLRRERIAERIRSLQELVPTVNKTD-------RAAMIDEIVDYVKFLRLQ 202
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +2
Query: 233 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 412
NQ TE+ DS +K S R H +E++RR I + +LQEL+P C +TD
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD--- 311
Query: 413 YKHSKAAVLQKSIDYIQYLLQQ 478
++++L I+Y++ L Q
Sbjct: 312 ----RSSMLDDVIEYVKSLQSQ 329
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +2
Query: 233 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 412
NQ TE+ DS +K S R H +E++RR I + +LQEL+P C +TD
Sbjct: 261 NQGTEEARDSTSSKRS------RAAIMHKLSERRRRQKINEMMKALQELLPRCTKTD--- 311
Query: 413 YKHSKAAVLQKSIDYIQYLLQQ 478
++++L I+Y++ L Q
Sbjct: 312 ----RSSMLDDVIEYVKSLQSQ 329
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ H+ AE+ RR+ I + +LQELVPT +TD +AA++ + +DY+++L Q
Sbjct: 155 DPHSIAERLRRERIAERIRALQELVPTVNKTD-------RAAMIDEIVDYVKFLRLQ 204
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 227 SSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGYDSLQELVPTCQQTD 403
S Q+TE ++ +A + + R A H ++E++RRD I + +LQ+L+PT + D
Sbjct: 141 SETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKAD 200
Query: 404 ASGYKHSKAAVLQKSIDYIQYLLQQ 478
K ++L I++++ L Q
Sbjct: 201 -------KVSILDDVIEHLKQLQAQ 218
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +2
Query: 305 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
R H++ EQ+RR I + + SL +++P Q + K KA+ L + I+YI +L ++
Sbjct: 35 RSKHSETEQRRRSKINERFQSLMDIIPQNQ----NDQKRDKASFLLEVIEYIHFLQEK 88
>At1g68920.2 68414.m07888 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 485
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Frame = +2
Query: 203 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 358
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 268 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 327
Query: 359 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 328 MKFLQDLVPGCNKVT------GKAVMLDEIINYVQSLQRQ 361
>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 486
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Frame = +2
Query: 203 QNIHQTPSS----SNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKG 358
+N Q+P+S SN + S D K + + RR +A H+ AE+ RR+ I +
Sbjct: 269 RNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISER 328
Query: 359 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 329 MKFLQDLVPGCNKVT------GKAVMLDEIINYVQSLQRQ 362
>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor GBOF-1, Tulipa
gesneriana, EMBL:AF185269; contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
Length = 297
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ H+ AE+ RR+ I + SLQELVP +TD KA++L + I+Y+++L Q
Sbjct: 108 DPHSIAERLRRERIAERMKSLQELVPNTNKTD-------KASMLDEIIEYVRFLQLQ 157
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 221 PSSSNQNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKKGYDSLQELVPTCQ 394
P++ ++ E+ G +A + ++R R E H AE++RR+ I + +LQ+L+P C
Sbjct: 227 PATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCN 286
Query: 395 QTDA 406
+ ++
Sbjct: 287 KVES 290
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERR---REAHTQAEQKRRDAIKK 355
G+S S N+ + S S EDED++G +A A KE++ REA QAE+ R++
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQEREAQRQAEEATRESRNT 121
Query: 356 GYDSLQEL 379
D E+
Sbjct: 122 KQDWYAEM 129
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERR---REAHTQAEQKRRDAIKK 355
G+S S N+ + S S EDED++G +A A KE++ REA QAE+ R++
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQEREAQRQAEEATRESRNT 121
Query: 356 GYDSLQEL 379
D E+
Sbjct: 122 KQDWYAEM 129
>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 409
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 305 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
R H+ EQ+RR I + L++L+P Q K KA+ L + I+YIQ+L ++
Sbjct: 158 RSKHSATEQRRRSKINDRFQMLRQLIPNSDQ------KRDKASFLLEVIEYIQFLQEK 209
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 38.3 bits (85), Expect = 0.003
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Frame = +2
Query: 197 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKE------RRREA---HTQAEQKRRDAI 349
S + I + S + + +++GD S +K+ RR +A H+ AE+ RR+ I
Sbjct: 221 SSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKI 280
Query: 350 KKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 281 SERMKLLQDLVPGCNKVT------GKALMLDEIINYVQSLQRQ 317
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/82 (26%), Positives = 45/82 (54%)
Frame = +2
Query: 233 NQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASG 412
+Q +++ + G +A S + + H AE+KRR+ + + + +L LVP ++ D
Sbjct: 126 HQKSDEFNRKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPGLKKMD--- 182
Query: 413 YKHSKAAVLQKSIDYIQYLLQQ 478
KA+VL ++ +I+YL ++
Sbjct: 183 ----KASVLGDALKHIKYLQER 200
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 37.9 bits (84), Expect = 0.004
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Frame = +2
Query: 185 GSSGSIQNI-HQTPSSSNQNTEDEDDSGDN--KASALSFKERRREA---HTQAEQKRRDA 346
GS+ SI+ + H+ N + D K + + RR +A H+ AE+ RR+
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193
Query: 347 IKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
I + LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 194 ISERMKFLQDLVPGCDKIT------GKAGMLDEIINYVQSLQRQ 231
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = +2
Query: 200 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQEL 379
++N H+ P DD + + R+ + ++K + ++K LQ+L
Sbjct: 105 LRNKHENPKKRRIQVLSSDDESEEFTREVPSVTRKGSKRRRRDEKMSNKMRK----LQQL 160
Query: 380 VPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
VP C +TD K +VL K+I+Y++ L Q
Sbjct: 161 VPNCHKTD-------KVSVLDKTIEYMKNLQLQ 186
>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 210
Score = 37.1 bits (82), Expect = 0.008
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 188 SSGSIQNIHQTPSSSNQNTE--DEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY 361
S G++ ++ S + Q+ + SG + ++L + + H +E+KRR I +
Sbjct: 55 SGGAVSSVGYGVSETGQDKYAFEHKRSGAKQRNSLK-RNIDAQFHNLSEKKRRSKINEKM 113
Query: 362 DSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+LQ+L+P +TD KA++L ++I+Y++ L Q
Sbjct: 114 KALQKLIPNSNKTD-------KASMLDEAIEYLKQLQLQ 145
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 37.1 bits (82), Expect = 0.008
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +2
Query: 227 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 397
S TE + + + + RR +A H+ AE+ RR+ I + LQ+LVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 398 TDASGYKHSKAAVLQKSIDYIQYLLQQ 478
KA VL + I+YIQ L +Q
Sbjct: 175 V------IGKALVLDEIINYIQSLQRQ 195
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 37.1 bits (82), Expect = 0.008
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Frame = +2
Query: 227 SSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQ 397
S TE + + + + RR +A H+ AE+ RR+ I + LQ+LVP C +
Sbjct: 115 SLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 174
Query: 398 TDASGYKHSKAAVLQKSIDYIQYLLQQ 478
KA VL + I+YIQ L +Q
Sbjct: 175 V------IGKALVLDEIINYIQSLQRQ 195
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 36.7 bits (81), Expect = 0.010
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 403
SS+ +N E++ + + + ++H+ AE+ RR+ I LQELVP C +
Sbjct: 185 SSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQ 244
Query: 404 ASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ A VL + I+++Q L +Q
Sbjct: 245 GT------ALVLDEIINHVQSLQRQ 263
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 263 GDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQ 442
G +A +L+ + + H AE+KRR+ + + + +L L+P ++ D KA+VL
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMD-------KASVLG 162
Query: 443 KSIDYIQYL 469
+I +I+YL
Sbjct: 163 DAIKHIKYL 171
>At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 281
Score = 36.3 bits (80), Expect = 0.013
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +2
Query: 161 ICNMYSRCGSSGSIQNIHQTPSSSN-QNTEDEDDSGDNKASALSFKERRREA---HTQAE 328
+C S G GS++ +T S ++ + + + + RR +A H+ AE
Sbjct: 110 LCGSESGNGD-GSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAE 168
Query: 329 QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ RR+ I + +LQ+++P C + KA VL + I+YIQ L +Q
Sbjct: 169 RARREKISEKMTALQDIIPGCNKI------IGKALVLDEIINYIQSLQRQ 212
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 35.9 bits (79), Expect = 0.018
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +2
Query: 188 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA---HTQAEQKRRDAIKKG 358
SSG + + SS + + +S +K + + RR +A H+ AE+ RR+ I
Sbjct: 153 SSGKRKEREKKVKSSTKKNKSSVES--DKLPYVHVRARRGQATDNHSLAERARREKINAR 210
Query: 359 YDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
LQELVP C + + A VL + I+++Q L +Q
Sbjct: 211 MKLLQELVPGCDKIQGT------ALVLDEIINHVQTLQRQ 244
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 34.7 bits (76), Expect = 0.041
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++H+ AE+ RR+ I + +LQ LVP C + KA +L + I+Y+Q L Q
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVT------GKALMLDEIINYVQTLQTQ 195
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 34.7 bits (76), Expect = 0.041
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++H+ AE+ RR+ I + +LQ LVP C + KA +L + I+Y+Q L Q
Sbjct: 145 DSHSLAERVRREKISERMRTLQNLVPGCDKVT------GKALMLDEIINYVQTLQTQ 195
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 34.7 bits (76), Expect = 0.041
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++H+ AE+ RR+ I + LQ+LVP C + KA +L + I+Y+Q L +Q
Sbjct: 310 DSHSLAERVRREKIGERMKLLQDLVPGCNKVT------GKALMLDEIINYVQSLQRQ 360
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 34.3 bits (75), Expect = 0.054
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQ-T 400
SS+ +N E++ + + + ++H+ AE+ RR+ I LQELVP C + T
Sbjct: 185 SSTKKNKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGT 244
Query: 401 DASG 412
D G
Sbjct: 245 DFGG 248
>At4g01720.1 68417.m00223 WRKY family transcription factor similar
to wild oat DNA-binding protein ABF2, GenBank accession
number Z48431
Length = 489
Score = 33.9 bits (74), Expect = 0.072
Identities = 20/81 (24%), Positives = 31/81 (38%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 364
GSSG + S ++ D DD + S L + R + D + + Y+
Sbjct: 69 GSSGFNDGLGLVNSCHGTSSNDGDDKTKTQISRLKLELERLHEENHKLKHLLDEVSESYN 128
Query: 365 SLQELVPTCQQTDASGYKHSK 427
LQ V +QT G H +
Sbjct: 129 DLQRRVLLARQTQVEGLHHKQ 149
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 200 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY-DSLQE 376
++ +H++ SSS+ ++E+E G+ + K+ +++ T+ E K + KKG+ + L+E
Sbjct: 71 LEKLHRSDSSSSSSSEEEGSDGEKRKK----KKEKKKPTTEVEVKEEE--KKGFMEKLKE 124
Query: 377 LVP 385
+P
Sbjct: 125 KLP 127
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++H+ AE+ RR+ I + LQ+LVP C + A G A +L IDY++ L Q
Sbjct: 113 DSHSLAERVRREKINERLKCLQDLVPGCYK--AMG----MAVMLDVIIDYVRSLQNQ 163
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQXXXXX 493
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L +
Sbjct: 417 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYISELKSKLQKAE 469
Query: 494 XXXNALRKDV 523
L+K +
Sbjct: 470 SDKEELQKQI 479
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 31.9 bits (69), Expect = 0.29
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 266 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQK 445
D+ + E +H AE++RRD I +L++LVP + D KAA+L
Sbjct: 51 DDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLD-------KAALLAT 103
Query: 446 SIDYIQYLLQQ 478
I+ ++ L Q+
Sbjct: 104 VIEQVKELKQK 114
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 31.5 bits (68), Expect = 0.38
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +2
Query: 218 TPSSSNQNTEDEDDSGDNKASALSF-KERRREAHTQ-------AEQKRRDAIKKGYDSLQ 373
T N DE+++ + + F KE RR+ + E++RR + + Y++L+
Sbjct: 175 TTQRDESNVGDENNNAQFDSGIIEFSKEIRRKGRGKRKNKPFTTERERRCHLNERYEALK 234
Query: 374 ELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
L+P+ + D +A++LQ IDYI L
Sbjct: 235 LLIPSPSKGD-------RASILQDGIDYINEL 259
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 152 ITDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDN 271
+ DI S G+S S QN Q SSS Q +D+DD D+
Sbjct: 770 VLDILQSLSNQGTSNSTQN-GQMASSSQQPNDDDDDDDDD 808
>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 258
Score = 31.5 bits (68), Expect = 0.38
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = +2
Query: 218 TPSSSNQNTED----EDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYD 364
T SN N D + S D KAS S K + R A +KRR+ I +
Sbjct: 135 TVDESNTNWVDGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKINERLK 194
Query: 365 SLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+LQ LVP + D S +L++++ Y+++L Q
Sbjct: 195 TLQNLVPNGTKVDIS-------TMLEEAVHYVKFLQLQ 225
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 31.5 bits (68), Expect = 0.38
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +2
Query: 254 DDSGDNKASALSFKER--RREA--HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKH 421
D+SG+N+ + R EA H +AE++RR+ + + + +L+ +VP + D
Sbjct: 410 DESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMD------ 463
Query: 422 SKAAVLQKSIDYIQYL 469
KA++L ++ YI L
Sbjct: 464 -KASLLGDAVSYINEL 478
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/77 (18%), Positives = 40/77 (51%)
Frame = +2
Query: 215 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQ 394
++ + ++ ED+ + DNK+ ++ ++ H +++ ++++ KK + L++ +
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKK 1131
Query: 395 QTDASGYKHSKAAVLQK 445
+ D + K S+ L K
Sbjct: 1132 KEDKNEKKKSQHVKLVK 1148
>At3g20640.1 68416.m02612 ethylene-responsive protein -related
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 454
Score = 31.1 bits (67), Expect = 0.51
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 403
S ++ +E G N + + + A KR++ + +LQ+LV +TD
Sbjct: 309 SEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTD 368
Query: 404 ASGYKHSKAAVLQKSIDYIQYLLQQ 478
A A+VL ++I+YI++L QQ
Sbjct: 369 A-------ASVLSEAIEYIKFLHQQ 386
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +2
Query: 206 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 367
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 368 LQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
L++ + + QQ + K A+VLQ++I+YI++L Q
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQ 322
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +2
Query: 206 NIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR------RDAIKKGYDS 367
N TP + ED+ + +A + S K R ++ + A++ R K ++
Sbjct: 227 NFVTTPQIISTRLEDKTKNLKTRAQSESLK-RAKDNESAAKKPRVTTPSPLPTFKVRKEN 285
Query: 368 LQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
L++ + + QQ + K A+VLQ++I+YI++L Q
Sbjct: 286 LRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQ 322
>At1g25310.1 68414.m03141 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 145
Score = 31.1 bits (67), Expect = 0.51
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 317 TQAEQKRRDAIKKGYDSLQELVPTCQQTD 403
T ++KRR+ I++ ++L+E+ P C Q+D
Sbjct: 72 TLLKKKRRERIRRQLETLKEITPNCPQSD 100
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 215 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQ 394
QTPS S Q +++ D A + KE E TQAE+ + + K+ ++E V +
Sbjct: 8 QTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKE-ESPVEEAVSVVE 66
Query: 395 QTDASGYKHSKAA 433
+ S + ++ A
Sbjct: 67 EKSESAPESTEVA 79
>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
protein
Length = 592
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
H +AE++RR+ + + + SL+ +VP + D KA++L +I YI L
Sbjct: 416 HVEAERQRREKLNQRFYSLRAVVPNVSKMD-------KASLLGDAISYINEL 460
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
H E+KRR+ + + + +L++++P+ + D K ++L +I+Y+Q L
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKID-------KVSILDDTIEYLQEL 486
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 30.3 bits (65), Expect = 0.89
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 161 ICNMYSRCGSSGSIQNIHQTP-SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR 337
I N+ SR S+ ++ P + N + SG N ++ + A + R
Sbjct: 160 IVNIGSRHESTSPKLAGNKRPFTGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNR 219
Query: 338 RDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
R+ I + LQELVP G K +L+K+I Y+++L Q
Sbjct: 220 RERISERLKVLQELVPN-------GTKVDLVTMLEKAIGYVKFLQVQ 259
>At4g29930.1 68417.m04258 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 323 AEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+E+ RR + + +L+ +VP + D KA+V++ SIDY+Q L+ Q
Sbjct: 58 SERNRRQKLNQRLFALRSVVPNISKLD-------KASVIKDSIDYMQELIDQ 102
>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
protein similar to the myc family of helix-loop-helix
transcription factors; contains Pfam profile PF00010:
Helix-loop-helix DNA-binding domain; PMID: 12679534
Length = 423
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 281 ALSFKERRREA---HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSI 451
A + KE+ A H +AE++RR+ + + +L+ +VP + D KA++L ++
Sbjct: 236 AAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPKVSRMD-------KASLLSDAV 288
Query: 452 DYIQYL 469
YI+ L
Sbjct: 289 SYIESL 294
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 221 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELV 382
P N N DED S DN+ S T A + ++ K+G D +++++
Sbjct: 377 PDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVM 430
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI+ L ++
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMD-------KASLLGDAISYIKELQEK 443
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 30.3 bits (65), Expect = 0.89
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 212 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 352
HQ SSS Q ++ E+DSG+ S ++ H + ++ R ++
Sbjct: 191 HQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRSDLE 237
>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain; PMID: 12679534; putative bHLH084
transcription factor
Length = 328
Score = 30.3 bits (65), Expect = 0.89
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +2
Query: 251 EDDSGDNKASALSFKERR-REAHTQAE----QKRRDAIKKGYDSLQELVPTCQQTDASGY 415
++D D+KA L+ K R R A T + +KRR+ I + LQ LVP + D S
Sbjct: 222 KEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDIS-- 279
Query: 416 KHSKAAVLQKSIDYIQYLLQQ 478
+L++++ Y+++L Q
Sbjct: 280 -----TMLEEAVQYVKFLQLQ 295
>At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
H +E+KRR+ + + + +L+ ++P+ + D K ++L +I+Y+Q L
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKID-------KVSILDDTIEYLQDL 450
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 364
G G I++ + PS ED+ D G K S + + ++ + ++K++D K G +
Sbjct: 121 GYGGRIESDYVKPSYGGH--EDDGDDGHKKHSGKDYDDGDEKSKKKEKEKKKDKKKDGNN 178
Query: 365 S 367
S
Sbjct: 179 S 179
>At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 344
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++H++AE++RR+ I L+ ++P +TD KA++L + I +++ L +Q
Sbjct: 134 KSHSEAERRRRERINTHLAKLRSILPNTTKTD-------KASLLAEVIQHMKELKRQ 183
>At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 368
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/57 (26%), Positives = 34/57 (59%)
Frame = +2
Query: 308 EAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++H++AE++RR+ I L+ ++P +TD KA++L + I +++ L ++
Sbjct: 176 KSHSEAERRRRERINNHLAKLRSILPNTTKTD-------KASLLAEVIQHVKELKRE 225
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 215 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGY-----DSLQEL 379
QTPS++ +EDE+ S + S + E TQAE + Y DS+ E+
Sbjct: 272 QTPSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQNDDSVSEV 331
Query: 380 VPTCQQTD 403
+ TD
Sbjct: 332 STSPPHTD 339
>At5g43650.1 68418.m05335 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir||T04030)
Length = 247
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +2
Query: 266 DNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQK 445
+ K + ++ ++ R H E+ RR+ K+ Y +L L+P + D K ++++K
Sbjct: 74 EEKKNTVAPEKERSRRHMLKERTRREKQKQSYLALHSLLPFATKND-------KNSIVEK 126
Query: 446 SIDYIQYL 469
++D I L
Sbjct: 127 AVDEIAKL 134
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/61 (27%), Positives = 21/61 (34%)
Frame = +2
Query: 239 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYK 418
N D D G K + +ER RE EQ DA S E + G+
Sbjct: 20 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDAAAAAARSADEDDDNDSEDGNGGFM 79
Query: 419 H 421
H
Sbjct: 80 H 80
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/61 (27%), Positives = 21/61 (34%)
Frame = +2
Query: 239 NTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYK 418
N D D G K + +ER RE EQ DA S E + G+
Sbjct: 93 NNNDNSDKGKEKEHDVRIRERERERDRAREQLNMDAAAAAARSADEDDDNDSEDGNGGFM 152
Query: 419 H 421
H
Sbjct: 153 H 153
>At2g45130.1 68415.m05616 SPX (SYG1/Pho81/XPR1) domain-containing
protein weak similarity to NUC-2 [Neurospora crassa]
GI:1399532, xenotropic and polytropic murine leukemia
virus receptor [Mus musculus castaneus] GI:6093320;
contains Pfam profile PF03105: SPX domain
Length = 245
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 123 DKILRFQLYKSLIYATCTLGVVAVGLYKTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKG 302
DK LR++ K+LI + + + VGL I Q+ II H+ L +
Sbjct: 20 DKFLRYKELKNLISSPAPVESIFVGLLNAEIDKFNAFFVEQEEDF---IIHHKELQYR-- 74
Query: 303 EEKLTPKQNRNEEM------PLRKDMIHF 371
++L K N+EM +RKD+++F
Sbjct: 75 IQRLVEKCGHNDEMSRENISEIRKDIVNF 103
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 305 REAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
++ + A + RR+ I + LQELVP G K +L+K+I Y+++L Q
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPN-------GTKVDLVTMLEKAISYVKFLQVQ 253
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = +2
Query: 230 SNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDAS 409
S N E +D + +N K+ + AE++RR + L+ +VP + D
Sbjct: 621 SGLNYESDDHNTNNNKGK---KKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMD-- 675
Query: 410 GYKHSKAAVLQKSIDYIQYLLQQ 478
+A++L +IDY++ LLQ+
Sbjct: 676 -----RASILGDAIDYLKELLQR 693
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +2
Query: 302 RREA--HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYI 460
R EA H +AE++RR+ + + + +L+ +VP + D KA++L +I YI
Sbjct: 315 REEALNHVEAERQRREKLNQRFYALRAVVPNISKMD-------KASLLADAITYI 362
>At3g30725.1 68416.m03909 expressed protein ; expression supported
by MPSS
Length = 111
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 212 HQTPSSSNQNT--EDEDDSGDNKASALS 289
HQ PSSS+ N ++EDD GD A ++
Sbjct: 39 HQKPSSSSNNNHMDEEDDVGDKDAKPIT 66
>At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 314
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
H AE+KRR + + +L L+P ++TD KA VL+ +I +++ L ++
Sbjct: 127 HVLAERKRRQKLNERLIALSALLPGLKKTD-------KATVLEDAIKHLKQLQER 174
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 155 TDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDD 259
TDI + S G + + ++ P+SSNQ ED+DD
Sbjct: 45 TDIVEVLSEV--RGGVNSQYRKPNSSNQALEDDDD 77
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 218 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 388
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ +E T
Sbjct: 691 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 742
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 218 TPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPT 388
TP S+ + EDD G++K S ERRR+ + +K + + + Y+ +E T
Sbjct: 903 TPGSNKRKDRVEDDDGESKPS-----ERRRKKGGKRRKKDKSSRARHYEDDEEEAAT 954
>At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmotic
stress-responsive proline dehydrogenase (POX) (PRO1)
(ERD5) nearly identical to SP|P92983 Proline oxidase,
mitochondrial precursor (EC 1.5.3.-) (Osmotic stress-
induced proline dehydrogenase) [Arabidopsis thaliana];
identical to cDNA proline oxidase precursor GI:1817543
Length = 499
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 323 AEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQY 466
AE++R ++ + +QE+ CQ+++ ++ +LQ +IDY+ Y
Sbjct: 252 AEEERE--LEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAY 297
>At2g31730.1 68415.m03874 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413
Length = 153
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 266 DNKASALSFKERRREAHTQAE-----QKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKA 430
+ K + S ++ + + H ++ ++R+D + + +LQ+LV +TD A
Sbjct: 13 ETKRNVYSLEDNKIKRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTDT-------A 65
Query: 431 AVLQKSIDYIQYLLQQ 478
+VL + + YIQ+L +Q
Sbjct: 66 SVLLEGMQYIQFLQEQ 81
>At2g28160.1 68415.m03420 basic helix-loop-helix (bHLH) family
protein
Length = 318
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Frame = +2
Query: 245 EDEDD--SGDNKASALSFKERRREAHTQ------AEQKRRDAIKKGYDSLQELVPTCQQT 400
EDE+D GD+ ++ + + R+ T +E++RR +K +L+ LVP +
Sbjct: 101 EDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRSLVPNITKM 160
Query: 401 DASGYKHSKAAVLQKSIDYIQYLLQQ 478
D KA+++ ++ Y+Q L Q
Sbjct: 161 D-------KASIVGDAVLYVQELQSQ 179
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/88 (21%), Positives = 33/88 (37%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 364
GS S H S + +DD +++K+R H IK+ +
Sbjct: 800 GSMPSPGTTHTGSSRRQSSRATDDDPASVSREVMAYKQRIGGLHFSKSASPASVIKRNGN 859
Query: 365 SLQELVPTCQQTDASGYKHSKAAVLQKS 448
E P + D + YK S ++ + +S
Sbjct: 860 HSHEAKPFSRVIDNNCYKSSSSSQMIES 887
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
H +AE++RR+ + + + +L+ +VP + D KA++L +I YI L
Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMD-------KASLLGDAIAYINEL 497
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +2
Query: 200 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAE 328
+++IH + S +Q+ +DD+G++ S+L E + E H ++
Sbjct: 593 LEHIHSS-KSEDQSVYSDDDAGESGESSLHRIEAKEEEHISSD 634
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 233 NQNTEDEDDSGDNKASALSFKERRREAHTQAE 328
N + D DDSG + LS +E R++A+ + +
Sbjct: 128 NSDLSDSDDSGSKAETVLSSEENRQDANEKVK 159
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +2
Query: 185 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 364
GSS + + Q+PS S ++E++D G + + ++ + E+KRR +K
Sbjct: 736 GSSREVSAV-QSPSRSVASSEEDDSRGKKQGRRARMLDLGKKMGEKLEEKRRHMEEKSRQ 794
Query: 365 SLQEL 379
++++
Sbjct: 795 IVEKM 799
>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to unknown protein (emb|CAB88055.1)
Length = 212
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 206 NIHQTPSSSNQNTEDEDDSGDNKASAL-SFKER 301
N+H S S E+ED+S D A +L S KE+
Sbjct: 168 NLHIVESESESEEEEEDESVDKPAESLDSVKEK 200
>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 352
Score = 27.5 bits (58), Expect = 6.2
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +2
Query: 245 EDEDDSGDNKASALSFKERRREAHTQAE-------QKRRDAIKKGYDSLQELVPTCQQTD 403
ED D+ + AL+ + R + A +KRR+ I + LQ LVP + D
Sbjct: 247 EDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVD 306
Query: 404 ASGYKHSKAAVLQKSIDYIQYLLQQ 478
S +L++++ Y+++L Q
Sbjct: 307 IS-------TMLEEAVHYVKFLQLQ 324
>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 379
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 311 AHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYL 469
+H AE++RR+ + + + +L+ +VP + D K ++L +I Y+ +L
Sbjct: 224 SHVVAERRRREKLNEKFITLRSMVPFVTKMD-------KVSILGDTIAYVNHL 269
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 243 QKTKMTVEIIRHRHLVLKKGEEKLTPKQNRNEE 341
++T+M + RH + +LK +KL + NR +E
Sbjct: 113 KRTQMKAQSERHENQILKSDNDKLRAENNRYKE 145
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 188 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDA 346
SS +N+ Q+ S+S Q ++D +G N S E+RR+ + + R A
Sbjct: 330 SSRKNKNVDQSCSTSKQQSKDFPAAGSN-ISESQLDEQRRKNNEEVSHNNRSA 381
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 27.5 bits (58), Expect = 6.2
Identities = 28/103 (27%), Positives = 46/103 (44%)
Frame = +2
Query: 170 MYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAI 349
M S CGSS S + + S T +D + +AL H +AE++RR+ I
Sbjct: 34 MQSLCGSSSSTSSYYPLAISGIGETMAQDRA----LAAL-------RNHKEAERRRRERI 82
Query: 350 KKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQ 478
+ L+ ++ +TD KA +L K + ++ L QQ
Sbjct: 83 NSHLNKLRNVLSCNSKTD-------KATLLAKVVQRVRELKQQ 118
>At2g03810.2 68415.m00341 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 167 NMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRR 340
N C + G I + S NQ+ D + S L KE+R T + E ++
Sbjct: 242 NDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKT 301
Query: 341 DAIKKGYDSLQELVPTCQQ 397
+ K+G + L + T Q
Sbjct: 302 EEPKQGEEKLSSVSTTTSQ 320
>At2g03810.1 68415.m00340 18S pre-ribosomal assembly protein
gar2-related contains weak similarity to
Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces
pombe]
Length = 439
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +2
Query: 167 NMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHT--QAEQKRR 340
N C + G I + S NQ+ D + S L KE+R T + E ++
Sbjct: 242 NDSKECLTLGDILSREDEQKSLNQDNISSDSHEEQSPSQLQDKEKRSLETTAIETELEKT 301
Query: 341 DAIKKGYDSLQELVPTCQQ 397
+ K+G + L + T Q
Sbjct: 302 EEPKQGEEKLSSVSTTTSQ 320
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.5 bits (58), Expect = 6.2
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +3
Query: 180 GVVAVGLYKTSIKLRRLLIKIQKTKMTVEIIRHRHLVLKKGEEKLTPKQNRNEEMPLRKD 359
G ++ + T +R+LL KI +V+ I R + K +E+L P+ + L
Sbjct: 584 GAESIKIDATRAAIRKLLTKIDVCIRSVDSISSR--IHKLRDEELQPQL-----IQLIHG 636
Query: 360 MIHFKSWFLPVNKLMHQAISTVKLQSFKNP*TISNTYYSKGVVXRKNEMR 509
+I L ++ QAI K++S K T+ N S ++ + E+R
Sbjct: 637 LIRMWRSMLRCHQKQFQAIRESKVRSLKANTTLQNDSGSTAILDLEIELR 686
>At1g57680.2 68414.m06546 expressed protein
Length = 362
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 406 CISLLTGRNQLLK*IISFLNGISSFLFCL 320
C+S+LT ++++ +SFL +S F FC+
Sbjct: 256 CLSVLTAADKIIFEALSFLAFLSLFCFCV 284
>At1g57680.1 68414.m06545 expressed protein
Length = 362
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 406 CISLLTGRNQLLK*IISFLNGISSFLFCL 320
C+S+LT ++++ +SFL +S F FC+
Sbjct: 256 CLSVLTAADKIIFEALSFLAFLSLFCFCV 284
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 191 SGSIQNIHQTPSSSNQNTEDEDDSGDNKAS-ALSFKERRREAHTQAEQKRRDAIKKGYDS 367
S S+ + + SSS+ +E +G +S + F +RR E ++K+R+ +K
Sbjct: 36 SFSLSTLFSSSSSSSSMENNEATNGSKSSSNSFVFNKRRAEGFDITDKKKRNLERKS--- 92
Query: 368 LQELVPT 388
Q+L PT
Sbjct: 93 -QKLNPT 98
>At1g30670.1 68414.m03750 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 264
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 293 KERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLL 472
K+R A + A +KRR I + L +L+P Q KH+ A + + Y+++L
Sbjct: 132 KKRELSAQSIAARKRRRRITEKTQELGKLIPGSQ-------KHNTAEMFNAAAKYVKFLQ 184
Query: 473 QQ 478
Q
Sbjct: 185 AQ 186
>At1g14687.1 68414.m01755 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 168
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 352
++ +N E+EDD+ + +RRR++ AEQ R+A+K
Sbjct: 82 TAEERNEEEEDDTEETSTEEKMTVQRRRKSKFTAEQ--REAMK 122
>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 421
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +2
Query: 215 QTPSSSNQNTEDE--DDSGDNKASA-LSFKERRREAHTQAEQKRRDAIKKGYDSLQELVP 385
QTP +D ++ D+KA+ L E + + +E+KRR+ I + L+ +VP
Sbjct: 229 QTPCLIMNKEKDVVVQNANDSKANKKLLPTENFKSKNLHSERKRRERINQAMYGLRAVVP 288
Query: 386 TCQQTDASGYKHSKAAVLQKSIDYIQYLL 472
K +K + ++DYI LL
Sbjct: 289 KIT-------KLNKIGIFSDAVDYINELL 310
>At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 466
Score = 27.1 bits (57), Expect = 8.3
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 167 NMYSRCGSSGSIQNIHQTPSSSNQN--TEDEDDSGDNKASAL-SFKERRREAHTQAEQKR 337
+M +R S + NI+Q + +N T E G S + H +E+KR
Sbjct: 238 SMMTRAMSFYNRLNINQRERFTRENATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKR 297
Query: 338 RDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVL 439
R+ + + + +L+ L+P G K KA+VL
Sbjct: 298 REKLNESFQALRSLLP-------PGTKKDKASVL 324
>At4g29550.1 68417.m04214 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 358
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 155 TDICNMYSRCGSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA 313
T + + S CG + +++ P S + T+++DD+ D +S+ KE +A
Sbjct: 13 TTVSHDVSSCGFISKEEWLNKHPPSGSGWTDEDDDNDDVFSSSFISKEELSDA 65
>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
to S-receptor kinase gi|392557|gb|AAA62232; contains
Pfam domains PF00954: S-locus glycoprotein family,
PF00069: Protein kinase domain and PF01453: Lectin
(probable mannose binding)
Length = 772
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 158 DICNMYSRCGSSGSIQNIHQTPS 226
D C+ Y+ CGS GS NI+++P+
Sbjct: 278 DSCDQYTLCGSYGSC-NINESPA 299
>At3g29763.1 68416.m03760 hypothetical protein
Length = 505
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 261 VEIIRHRHLVLKKGEEKLTPKQNRNEEMPLRKDMIH 368
++ I ++ V+KK K PK N+ P++KD++H
Sbjct: 78 LKYIAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVH 113
>At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 295
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +2
Query: 314 HTQAEQKRRDAIKKGYDSLQELVPTCQQTDASGYKHSKAAVLQKSIDYIQYLLQQXXXXX 493
H AE+KRR+ + + + +L L+P ++ D K +L +I ++ L +Q
Sbjct: 120 HVLAERKRREKLSEKFIALSALLPGLKKAD-------KVTILDDAISRMKQLQEQLRTLK 172
Query: 494 XXXNALRK 517
A R+
Sbjct: 173 EEKEATRQ 180
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +2
Query: 224 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQELVPTCQQTD 403
S + +DEDD K S + + + AE++RR + +L+ LVP + D
Sbjct: 289 SDCSDQIDDEDDPKYKKKSGKGSQAK----NLMAERRRRKKLNDRLYALRSLVPRITKLD 344
Query: 404 ASGYKHSKAAVLQKSIDYIQYL 469
+A++L +I+Y++ L
Sbjct: 345 -------RASILGDAINYVKEL 359
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 197 SIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR-RDAIKKGYDSLQ 373
++Q Q S Q E E++ + + S + +RREA +Q+R RD+I++ Q
Sbjct: 186 NLQEQRQRDSIERQRREAEENLQEQRQRD-SIERQRREAQENLQQQRQRDSIERQRREAQ 244
Query: 374 E 376
E
Sbjct: 245 E 245
>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
Length = 769
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 261 VEIIRH---RHLVLKKGEEKLTPKQNRNEEMPLRKDMIH 368
VE++++ ++ V+KK K PK N+ P++KD++H
Sbjct: 207 VELLKYTAGQNEVVKKVVLKNAPKNNQMTSPPIQKDIVH 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,896
Number of Sequences: 28952
Number of extensions: 215854
Number of successful extensions: 1146
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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