Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J05
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    27   2.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.5  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   9.7  

>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
 Frame = +2

Query: 335 ESQLLMIYVLRMCL----RVCVRE*NSLPYL--PPCSF*KSFLARSVSLFNWISYQKYCV 496
           E Q   +Y+ R       ++C+ E  +L YL     +  K+  ++S+   +W+      +
Sbjct: 136 EKQTKHVYIRRKIYDSQHQLCIEEDRTLAYLNRQELAIPKTLRSKSIPQHSWVFTPTPIM 195

Query: 497 LLYYSVKRFRNHVILYN 547
           +  YS   F  H+I +N
Sbjct: 196 VFRYSALMFNAHMIHWN 212


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 505 LLGKEISESCYFIQQNKINRCFFH 576
           +L +  S SCY + +N +NRC F+
Sbjct: 262 VLRETSSVSCYELTKNGVNRCVFY 285


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 243 NLTFVMNSFVEVINNNY*NRAYKLAVICVYRRAS 344
           + TF+ + F   I NNY  R Y LA   V    S
Sbjct: 836 SFTFIYSDFTSNITNNYRPRIYYLAQFSVCENQS 869


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 650 TFWIVKSFVH--VWITYNLKKNFNSIQWKKHLFILF 549
           T  I  S +H  +W++Y   KN  +  W K +F+ F
Sbjct: 99  TSLIAGSLLHGNIWLSYEGAKNVETGVWIKEMFLDF 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,030
Number of Sequences: 5004
Number of extensions: 46375
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)