Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J05
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    28   6.8  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 328 CTGEPVTDDLCSAYVFTSLCA 390
           C+GEPV   +C+    T +CA
Sbjct: 524 CSGEPVETQICNTQACTGMCA 544


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 491 CVLLYYSVKRFRNHVILYNKIK 556
           C  + YSV  FRNH  L  K+K
Sbjct: 308 CPAILYSVDSFRNHTFLCKKLK 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,853
Number of Sequences: 27780
Number of extensions: 257047
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)