Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J05
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38380.2 68418.m04636 expressed protein                             29   3.6  
At5g38380.1 68418.m04635 expressed protein                             29   3.6  
At2g07190.1 68415.m00824 hypothetical protein                          27   8.4  

>At5g38380.2 68418.m04636 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 659 RHTTFWIVK---SFVHVWITYNLKKNFNSIQWKKHLFILFCCI 540
           RHT F I+    +F  +W  Y++ +  N       LF LFCC+
Sbjct: 17  RHTPFQIIHLIGNFFRIWSVYSMYRYLNQTGAPVVLF-LFCCL 58


>At5g38380.1 68418.m04635 expressed protein
          Length = 267

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -1

Query: 659 RHTTFWIVK---SFVHVWITYNLKKNFNSIQWKKHLFILFCCI 540
           RHT F I+    +F  +W  Y++ +  N       LF LFCC+
Sbjct: 17  RHTPFQIIHLIGNFFRIWSVYSMYRYLNQTGAPVVLF-LFCCL 58


>At2g07190.1 68415.m00824 hypothetical protein
          Length = 452

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 280 ITSTKEFITKVRFRDGVCQNLIQQ*YSRRNYYPH 179
           + + +EF+ +   RDG   N+I++  SR+++  H
Sbjct: 189 VINDREFVWRDEIRDGEVDNMIEKIKSRKDFRDH 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,212
Number of Sequences: 28952
Number of extensions: 221253
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)