Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J03
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.5  

>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -3

Query: 524 VLEHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVC 345
           V+ + V ++ +   + N R      +S+  CA   +I+  Q+D  +  + V+  R +  C
Sbjct: 85  VIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYC 144

Query: 344 KSR 336
           KS+
Sbjct: 145 KSK 147


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 186 DGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPG 365
           D +SGA++ V  T     +    GS+  T+ +     T+G   + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 467 NAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSIDIVVCQSSCSGS 288
           N+GH  +S S+ +  + +      ++S       + DVSV  S   S DIV      S +
Sbjct: 139 NSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSV--STGTSTDIVTLPPPASST 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,039
Number of Sequences: 5004
Number of extensions: 53274
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)