Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J03
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        30   1.2  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.6  
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          29   2.9  
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)                   29   3.8  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   5.0  
SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   6.6  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             28   6.6  
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)                 27   8.8  
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)                       27   8.8  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +3

Query: 117 DDQPEQWGNSRVRRQAGALTINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAA 296
           D++P       V+ +    TIN    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 297 TAGLAY-DNVNGHGATLTNTH-IPGFGDKLTAAGKVN 401
              ++Y DN+N   A  T+   IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 165  PLAGAPWSCPTAPADHHTVRCSSQALQRART 73
            P  G  WSC TA  +H  VR  + + +R RT
Sbjct: 1363 PAQGNAWSCGTAGRNHVRVRDGTMSGKRTRT 1393


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 22  CSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSS 135
           C+PSY+ C  S++++T+ TC+    +TTS +   S +S
Sbjct: 4   CTPSYT-CTTSYTSTTSYTCTTSYTSTTSYTSTTSYTS 40


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 333 GATLTNTHIPGFGDKLTAAGKVNLFHNDNHDLSAKAFATKNMPSIPQ-VPDFNTVGGG 503
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP+  T G G
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 391 AKSTCSTMITMTSAQRLSLLRTCPAFLKFPISTLLVADWTTCSRTRLVHQRPPHTQTSSI 570
           A +T + ++T TS Q      T      F   T +  + TT +RT+       HT+TS+ 
Sbjct: 50  AVATSTAVLTATSTQT-ETKTTVTTLSTFHAQTEIKTEVTTETRTKTDTATKTHTETSTA 108

Query: 571 ETTT 582
           E TT
Sbjct: 109 EHTT 112


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 277 WLVRSTEPRALSLWFSLPVIGTLTIAPEVPSELIV 173
           W+V ++EP  LS    + +I T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
          Length = 326

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 317 VVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRYLDYST*GTVRVDSESTR 162
           V C    +G    LV+     K + +  F A YRY+     GTV V S + +
Sbjct: 142 VYCDMKTNGGGWTLVTRNEPLKRSLVTTFYADYRYISTEKLGTVLVTSPAVQ 193


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +1

Query: 13  IRRCSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRS 132
           I RC+  Y+S   + SA+T G CS+ S   TSNS   S S
Sbjct: 43  IIRCT--YTSDSSTTSATTIGVCSIISCTYTSNSATSSGS 80


>SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 333 GATLTNTHIPGFGDKLTAAGKVNLFHNDNHDLSAKAFATKNMPS 464
           G   T+   P FG++     ++NLF+ +N DLSA+      +PS
Sbjct: 72  GKRTTHNCKPNFGNQSNLCNQLNLFNFEN-DLSARDMPRNVVPS 114


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 363 GFGDKLTAAGKVNLFHNDNHDLSAKAFAT 449
           G  D LT  G VN+FHN   DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 228 NENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLF 407
           N  H +   G ++    +  G  T  L+  + +G+G +LT++    FG K+ +  K+ + 
Sbjct: 429 NRTHPVKYYGPINYRTDVTSG--TTHLSVVDADGNGVSLTSSINKYFGSKIRSK-KLGII 485

Query: 408 HND 416
           +ND
Sbjct: 486 YND 488


>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
          Length = 755

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 472 KFPISTLLVADWTTCSRT 525
           +FP+ T  V +W TCS+T
Sbjct: 216 RFPVPTWHVTEWDTCSKT 233


>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 349

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +3

Query: 231 ENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKLTAAGKVNLFH 410
           +N+K     S D  ++ K  A T+GLA +    +G      ++P   +++    K N   
Sbjct: 83  DNYKKKKTKSKDNNSETKAKAGTSGLAKNKTKDNG----TPNLPSLFERIK---KKNNAT 135

Query: 411 NDNHDLSAKAFATKNMPSIPQVPDFNTVGGGL 506
            +    S     +   P++P++  F+T    L
Sbjct: 136 KNGETTSQVTINSSGTPALPKLASFDTENSSL 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,451,613
Number of Sequences: 59808
Number of extensions: 436505
Number of successful extensions: 1242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)