Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J03
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    31   0.83 
Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 174  TINSDGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNT 353
            T+ + G++G+ V  P T +     S+  S+  +     G++T+G       G  +T TN+
Sbjct: 1548 TVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTVATTQGSSSTQTNS 1607

Query: 354  H 356
            +
Sbjct: 1608 N 1608


>Z92789-6|CAB07218.2|  303|Caenorhabditis elegans Hypothetical
           protein H02I12.4 protein.
          Length = 303

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 469 LKFPISTLLVADWTTCSRTRLVHQRPPHTQTSSIETTT 582
           +K+ + TL  A    CS    VH R PH Q +++  +T
Sbjct: 5   IKYTVLTLFYAQLINCSGYLEVHLRSPHEQPATVNIST 42


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 459 PSIPQVPDFNTVGGGLDYMFKDKIGASATAAHTDF 563
           P +PQ   +     GL   F D  GASA+++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 533 TNLVLEHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVIIVEQVDFASG 384
           T + LE V++ ++NS E     N       ++LC +  ++    VDF SG
Sbjct: 652 TAIFLEDVMRPSSNSAESPPSPNTSKAFIFDALCGKSRLVDSTNVDFFSG 701


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -1

Query: 280 IWLVRSTEPRALSLWFSLPVIGTLTIA 200
           +W+VRS E R L+++F + V+  +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195


>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 12  HSKMFTKLFLVSVLLVGVNSRYVLVEEPGYYIEQYD--DQPEQWGNSRVRRQAGALTIN 182
           H KM+T    ++VL++G++   VL+    + +  YD   Q E W NS   +     TIN
Sbjct: 75  HRKMWTS--SINVLMIGISFCDVLIIGNTFGMRIYDILQQNECWQNSTYLKCLTTFTIN 131


>Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical
           protein C14A6.1 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 479 RFQHCWWRIGLHVQGQDWCISD 544
           +++H  W IG+H  GQDW  +D
Sbjct: 242 KYEHLAW-IGMHKVGQDWVWTD 262


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 359 DVSVCKSRSVSIDIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRY 213
           D S  +      D+V C S  S + +H ++ ++ + S+   +FVA Y +
Sbjct: 68  DSSTFRGSQSREDLVACSSMNSVNNVHDMNTVSSSSSSSAPLFVALYDF 116


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 359 DVSVCKSRSVSIDIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRY 213
           D S  +      D+V C S  S + +H ++ ++ + S+   +FVA Y +
Sbjct: 78  DSSTFRGSQSREDLVACSSMNSVNNVHDMNTVSSSSSSSAPLFVALYDF 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,266
Number of Sequences: 27780
Number of extensions: 320425
Number of successful extensions: 1015
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)