Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J02
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    26   1.3  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   4.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    24   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   9.2  

>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 79  CFECRRTERQSNKKTIFPNMFVY 11
           C E R T  QS  ++ +PN+ VY
Sbjct: 35  CLERRATVTQSKARSAYPNILVY 57


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  FYCFVALCVGIQSRYL 87
           F+C+V +C+G+   ++
Sbjct: 344 FFCYVGICIGVYGNFV 359


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 309 VAAPSFRLSVKFKEPIAPIIF*SLPSKGYFNSSTRGTIGVERESSVR 169
           + AP+   S+    P+AP  +  L SK + +    G I +    S R
Sbjct: 337 INAPNSSSSISTNSPLAPTAYYKLLSKSWLSLEPVGQICISLSFSKR 383


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 76   FECRRTERQSNKKTIFPN 23
            FECRR + ++NK  I  N
Sbjct: 1226 FECRRLKLENNKDEILRN 1243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,950
Number of Sequences: 5004
Number of extensions: 23140
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)