Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J02
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    27   2.8  
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910...    27   4.9  
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883...    26   6.4  
05_01_0151 - 1001851-1001898,1002227-1002311,1003064-1003225,100...    26   6.4  
08_02_0053 + 11721658-11721689,11721960-11722710                       26   8.5  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 110 IFQHYEEPEL*TSSNSPHGTRTELSRSTPMV 202
           + QH+   E  TSS++P  T TE   STP +
Sbjct: 436 VTQHHGADETKTSSDAPTMTSTETMASTPAI 466


>09_03_0038 +
           11790075-11790302,11790397-11790542,11790915-11791017,
           11791148-11791334,11791466-11791559,11791702-11791855,
           11792189-11792305,11792695-11792808,11793629-11793811,
           11794209-11794494,11794592-11794713,11794746-11794802,
           11794803-11794900,11795036-11795213,11795355-11795455,
           11795530-11795629,11795751-11795828,11796785-11796862,
           11796956-11797138
          Length = 868

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 117 WNIVNRFTDNQVSALNADAQSD 52
           WNI  +F D+  SAL  D+Q++
Sbjct: 317 WNIWTQFLDSTTSALKLDSQAE 338


>11_02_0151 +
           8837444-8837876,8838173-8839434,8839517-8839885,
           8839963-8840223,8840230-8840442,8840602-8840967,
           8841402-8841667,8842087-8842197,8842288-8842317,
           8842444-8842465
          Length = 1110

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 TSSNSPHGTRTELSRSTPMVPLV 211
           ++S+S HGT T L+  TP  P +
Sbjct: 381 SNSDSSHGTPTSLAEKTPRSPAI 403


>05_01_0151 -
           1001851-1001898,1002227-1002311,1003064-1003225,
           1003537-1003672,1004546-1004727,1005599-1005706,
           1006133-1006200,1006284-1006292
          Length = 265

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 63  RRHSKQIPDCQ*TCLLYSNTMRSLNYRQALTVRMGR 170
           R H +Q  +     +    T R+ NY Q  + RMGR
Sbjct: 79  RAHEQQTAEAAWLVVTAPETERAANYNQQFSTRMGR 114


>08_02_0053 + 11721658-11721689,11721960-11722710
          Length = 260

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 32  DRLFIALSLCASAFKADT*LSVNLFT 109
           DR+F+  S+C S F++D  L   L T
Sbjct: 95  DRIFMDFSVCPSYFRSDRTLGAELAT 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,717,219
Number of Sequences: 37544
Number of extensions: 155126
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)