Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J02
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_12105| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)              26   8.8  
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)                       26   8.8  
SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)               26   8.8  
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 62 HRATKQ*KDDLPEHVCVL 9
          +R+ KQ +DD  +HVCVL
Sbjct: 33 NRSAKQSRDDASDHVCVL 50


>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 132 GSS*CWNI-VNRFTDNQVSALNADAQSDKAIKRRSSRTCLCTEW 4
           G+   WN  +N+  +   SA+ ++ +    I  +S  TCL T+W
Sbjct: 521 GTPFLWNDKLNQLFEESKSAIISEIEDGVRIFDKSKPTCLATDW 564


>SB_12105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 141 YSSGSS*CWNIVNRFT 94
           +S GS  CW+IVNR T
Sbjct: 190 HSRGSKGCWDIVNRIT 205


>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
          Length = 421

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 82  YLIVSEPVYYI-PTL*GA*TIDKL*QSAWDAHGALTLNSDGTSGAGVKVPF 231
           Y ++ +P YY  P      TI+   +SAW A+GA        +  G K PF
Sbjct: 336 YDVIGQPSYYRGPVANHGITIN---ESAWSAYGAPPTQELPCATCGFKAPF 383


>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1387

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 82   YLIVSEPVYYI-PTL*GA*TIDKL*QSAWDAHGALTLNSDGTSGAGVKVPF 231
            Y ++ +P YY  P      TI+   +SAW A+GA        +  G K PF
Sbjct: 1179 YDVIGQPSYYRGPVANHGITIN---ESAWSAYGAPPTQELPCATCGFKAPF 1226


>SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)
          Length = 311

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 82  YLIVSEPVYYI-PTL*GA*TIDKL*QSAWDAHGALTLNSDGTSGAGVKVPF 231
           Y ++ +P YY  P      TI+   +SAW A+GA        +  G K PF
Sbjct: 228 YDVIGQPSYYRGPVANHGITIN---ESAWSAYGAPPTQELPCATCGFKAPF 275


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 82   YLIVSEPVYYI-PTL*GA*TIDKL*QSAWDAHGALTLNSDGTSGAGVKVPF 231
            Y ++ +P YY  P      TI+   +SAW A+GA        +  G K PF
Sbjct: 1404 YDVIGQPSYYRGPVANHGITIN---ESAWSAYGAPPTQELPCATCGFKAPF 1451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,133,256
Number of Sequences: 59808
Number of extensions: 183914
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)