Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J02
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-3|AAK67216.3|  260|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical p...    25   10.0 

>U40419-3|AAK67216.3|  260|Caenorhabditis elegans Hypothetical
           protein C27F2.9 protein.
          Length = 260

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 139 IDKL*QSAWDAHGALTLNSDGTSGAGVKVPF 231
           +DK  Q  W   G     S G +GAG  VPF
Sbjct: 143 LDKYKQPEWKLPGHTAALSFGIAGAGTGVPF 173


>Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical
           protein Y49E10.22 protein.
          Length = 259

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  RSSFYCFVALCVGIQSRYLIVSEPVYYIPTL 123
           R SF C V  C+   +  + V E ++Y+ ++
Sbjct: 53  RKSFECHVESCISESTSKIYVIEDIFYLKSM 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,331,374
Number of Sequences: 27780
Number of extensions: 130008
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)