Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J02
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   3.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 52  VALCVGIQSRYLIVSEPVYY 111
           ++LC     RYL V++P+ Y
Sbjct: 127 LSLCAISIDRYLAVTQPLIY 146


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 58  LCVGIQSRYLIVSEPVYY 111
           LC     RYL V+ PV Y
Sbjct: 156 LCAISLDRYLAVTRPVSY 173


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 55  ALCVGIQSRYLIVSEPVYYI 114
           A+CVG+ +  +I   PV Y+
Sbjct: 501 AICVGVFTFNIIKFVPVKYL 520


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 55  ALCVGIQSRYLIVSEPVYYI 114
           A+CVG+ +  +I   PV Y+
Sbjct: 554 AICVGVFTFNIIKFVPVKYL 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,103
Number of Sequences: 438
Number of extensions: 1852
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)