Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J02
         (333 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33590.1 68414.m04158 disease resistance protein-related / LR...    28   1.4  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    26   7.2  
At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing...    26   7.2  
At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing...    26   7.2  
At3g60690.1 68416.m06790 auxin-responsive family protein similar...    25   9.5  

>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
           protein-related contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 477

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 171 RVPCGLLELVYSSGSS*C-WNIVNRFTDNQVSALNADAQSDKA 46
           R P G+L   +  G++ C WN V   T ++VSAL+   Q+D A
Sbjct: 44  RDPSGILSS-WKKGTACCSWNGVTCLTTDRVSALSVAGQADVA 85


>At5g15920.1 68418.m01862 structural maintenance of chromosomes
           (SMC) family protein (MSS2) similar to SMC-related
           protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 25  SGRSSFYCFVALCVGIQSRYL 87
           SG+SS  C +ALC+G + + L
Sbjct: 54  SGKSSLVCAIALCLGGEPQLL 74


>At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing
           protein / zinc finger (C3HC4-type RING finger) family
           protein contains Pfam profiles PF00097: zinc finger
           C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
           terminal region
          Length = 282

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   LPFSTQTCSGRSSFYCFVALCVGIQS-RYLIVSEPVYYI 114
           +PF    C  R  +YC    C    S R L  +EPV  I
Sbjct: 235 IPFIALPCQHRYCYYCIRTRCASAASFRCLRCNEPVVAI 273


>At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing
           protein / zinc finger (C3HC4-type RING finger) family
           protein contains Pfam profiles PF00097: zinc finger
           C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
           terminal region
          Length = 333

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   LPFSTQTCSGRSSFYCFVALCVGIQS-RYLIVSEPVYYI 114
           +PF    C  R  +YC    C    S R L  +EPV  I
Sbjct: 286 IPFIALPCQHRYCYYCIRTRCASAASFRCLRCNEPVVAI 324


>At3g60690.1 68416.m06790 auxin-responsive family protein similar to
           auxin-induced protein SAUR-AC1 (GP:546362)
           (PIR:T06084)[Arabidopsis thaliana] PIR:T06084
          Length = 170

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/56 (23%), Positives = 22/56 (39%)
 Frame = -1

Query: 327 PVPLAAVAAPSFRLSVKFKEPIAPIIF*SLPSKGYFNSSTRGTIGVERESSVRVPC 160
           PVP    A    +    F+  + PI++ + P  G          G  +E  + +PC
Sbjct: 87  PVPKGHSAVYIGKKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGITIPC 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,861,948
Number of Sequences: 28952
Number of extensions: 120313
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)