Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J01
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    28   1.2  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    28   1.2  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   4.7  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   4.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.2  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   6.2  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   8.2  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   8.2  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   8.2  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +2

Query: 284 CRLPIQSSSTNQVYSSRWRFSSKLPSIPRFTTNIRLSGK 400
           C L I  SS  Q YSS +  S+ +PSI + T NIR + K
Sbjct: 76  CELKI--SSVYQSYSSTFNVSNHVPSISK-TVNIRETSK 111


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 336 GGSPVNYPVYRGSPPTYVYQVK 401
           G +P   P+ RG+P +Y+Y  K
Sbjct: 177 GPNPQTQPILRGNPTSYIYNTK 198


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 270 QPKKPAVYQYNPPQQIRYTP 329
           QPK   V Q + P  IRYTP
Sbjct: 169 QPKSAVVQQRDDPVYIRYTP 188


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 415 NTEHYLLVWLY*IWAHSLAQLTLAAIAVTNIPPNQVKRVCLAFKKTTATMRKL 573
           NT+  +  W+   +  S+ +   A +AV  I    + +VCL  +   A ++ L
Sbjct: 264 NTDPLVYKWVLNFFCKSVVKQAEAEVAVNPISAYPLAKVCLLLQTQNADLKDL 316


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 186 GGTNGH-PSSGGNHGYPGTGGMSGNNHG 266
           GG+ G  P  GG  G+ G GG  G++HG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGG-EGHHHG 221


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 198 H*FLQVYFHCRLQIIHQTMGIRDYLLTMDIRGYHPTMGIRDYHPTMGIRDYHQ 40
           H  + V    R+ ++      +  +L + I   HPT GI   HP + I  + Q
Sbjct: 536 HVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQ 588


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 587 LTVDFSFLIVAVVFLNAKHTRFTWFGGIFVTAMAASVSCASEC 459
           L  D +  I AV F+N KH       G++   MA+ +     C
Sbjct: 26  LCYDDNAKIYAVKFVNKKHATSCMNAGVWARRMASEIQLHKLC 68


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 338 ATYWSIPDLLRRIVLVNGRFFGL---IAMIISRHSP 240
           ++YWS  DL   +V+  GR FG+   I     +H P
Sbjct: 626 SSYWSSEDLACFLVVETGRNFGIANSIEQFRGKHMP 661


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 258 YFPTFPQCLDIHGFL 214
           YFP+F  CL++  FL
Sbjct: 394 YFPSFSYCLELQNFL 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,151
Number of Sequences: 5004
Number of extensions: 44553
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)