Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_J01
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.55 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   6.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 183 PGGTNGHPSSGGNHGYPGTGGMSGNNHG 266
           P G++ H  SG N+    +G  S ++HG
Sbjct: 380 PSGSSVHSDSGENNSRGHSGQSSSHHHG 407



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 195 NGHPSSGGNHGYPGTGGMSGNNHG 266
           N + ++G N    G G  + NN+G
Sbjct: 247 NNNNNNGANDNGNGNGASNNNNNG 270


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 203 PVFRRKPWISRHWGNVG 253
           PV+R +PW    WG +G
Sbjct: 551 PVWRFQPWGPFTWGGIG 567


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 212 RRKPWISRHWGNV 250
           RR PW S +W  V
Sbjct: 276 RRNPWFSEYWEEV 288


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 212 RRKPWISRHWGNV 250
           RR PW S +W  V
Sbjct: 366 RRNPWFSEYWEEV 378


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 282 PAVYQYNPPQQIRYTP 329
           P VY++ PP   R+ P
Sbjct: 382 PNVYRFRPPLNPRFEP 397


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 PGTGGMSGNNHGYQPKKPAVYQYNPPQ 311
           PG  G+ G++  + PK+   ++ + P+
Sbjct: 271 PGPPGVPGDHGDHAPKQTVRFKVHDPK 297


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 204 PSSGGNHGYPGTGGMSGNNHG 266
           P+S   +G PG+GG+  +  G
Sbjct: 279 PNSTTMNGSPGSGGIRSDQMG 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,187
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)