Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I23
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    28   0.82 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.82 
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   4.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   4.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   5.8  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 466 LCSPRTPIPQKTIVKNTTNMRLPVDRITSIP 374
           L SP   I   TI+K+TTN+ L V+  TS+P
Sbjct: 537 LASPNKTI-DGTIIKSTTNVYLKVNSETSLP 566


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 448 PIPQKTIVKNTTNMRLPVDRITSIPLIMYCP-FILYTQLIL 329
           PIP+K ++KN     L +       LI +   F+LY Q+IL
Sbjct: 126 PIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIIL 166


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 452 HTYSPEDNSEKYHKYAAARRQNYLHSTYYVLSIHTL 345
           +TY   DNSE + KY   +++   H    +   H L
Sbjct: 292 NTYGELDNSELFRKYGFTKKKGTPHDFVLIKKEHWL 327


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 457 PRTPIPQKTIVKNTTNMRLPVDRITS 380
           P+TPIP++   K   N ++  DRIT+
Sbjct: 310 PKTPIPKRKPHKVPMNEKVSEDRITT 335


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = -1

Query: 322 KFCFIKLHLNIVI*SLNVTMISSPTINAHCIFPSLYRLF 206
           +FC ++ +L+ ++ S+    + SP     C+F   + +F
Sbjct: 355 QFCHVRSYLSAILPSVCRIFLPSPGTVVFCVFDVTFAMF 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,006
Number of Sequences: 5004
Number of extensions: 41919
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)