Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I23
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343...    29   2.5  
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443...    27   7.5  
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672     27   10.0 
01_02_0134 + 11470543-11470608,11471718-11471775,11472025-114722...    27   10.0 

>01_06_0849 +
           32433429-32433743,32433840-32434021,32434235-32434310,
           32434413-32434570,32435567-32435738,32435817-32435927,
           32436197-32436280
          Length = 365

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 323 LKQN*LCIKYEW-TIHNKWNGGNSVDGQPHICGIFHYCLLGNRCARATQF 469
           LK N +C++ +   I   WNGG    G+          +LG+ C R  +F
Sbjct: 89  LKLNTVCVEAQCPNIGECWNGGGGAGGEGDGIATATIMVLGDTCTRGCRF 138


>05_06_0043 +
           25143513-25143866,25144010-25144191,25144284-25144374,
           25144452-25144568,25144922-25144976,25145008-25145093,
           25145190-25145300,25145564-25145608,25145695-25145740,
           25146078-25146152,25146902-25146971,25147128-25147437,
           25147778-25147851,25147996-25148151,25148416-25148539
          Length = 631

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 323 LKQN*LCIKYEW-TIHNKWNGGNSVDGQPHICGIFHYCLLGNRCARATQF 469
           LK N +C++ +   I   W+GG    G           LLG+ C R  +F
Sbjct: 102 LKLNTVCVEAQCPNIGECWDGGGGAGGDGDGIATATIMLLGDTCTRGCRF 151


>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
          Length = 629

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 463 CSPRTPIPQKTIVKNTTNMRLPVDRITSIPL 371
           C PR P+  +  V  T   R PVD +T + +
Sbjct: 96  CHPRLPVLVRVAVPATAARRAPVDLVTLLDI 126


>01_02_0134 +
           11470543-11470608,11471718-11471775,11472025-11472278,
           11472307-11472511,11472907-11473142
          Length = 272

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/18 (50%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
 Frame = -2

Query: 390 ELPPFHLLC--IVHSYFI 343
           ++PPFH+LC  +VH+ F+
Sbjct: 12  QMPPFHILCAKLVHAIFL 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,082
Number of Sequences: 37544
Number of extensions: 225467
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)