Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I23
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         29   2.5  
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)                27   7.7  
SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)                      27   7.7  

>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 419 YHKYAAARRQNYLHSTYYV--LSIHTLYTINFVLKILFHKITLEYSHIITQ 273
           Y  + A  R  YL+S Y+V  + I + + +N VL +L  +   E   + T+
Sbjct: 518 YSTFEAIDRDGYLYSVYFVSLIVIGSFFMLNLVLGVLSGEFAKERERVETR 568


>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 251 NHKRTLYISFTVP-FVFLTSFTLKTSKR 171
           NHKRTLY++F  P F+ L +   K S++
Sbjct: 353 NHKRTLYLTFVRPHFLELKASVFKRSEK 380


>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
          Length = 1663

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 469  KLCSPRTPIPQKTIVKNTTNM 407
            K+CSPR P P +T   NT+ +
Sbjct: 1214 KMCSPRPPSPVRTTKLNTSRL 1234


>SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)
          Length = 1198

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 407 AAARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHIITQ 273
           A  RR+NY+H  Y +++   +  + + L    + I + Y  + TQ
Sbjct: 54  AQQRRRNYMHVRYELVATQNIIHVRYELVATQNIIHVRYELVATQ 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,563
Number of Sequences: 59808
Number of extensions: 296949
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)