Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I23
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    28   3.8  
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      27   5.1  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      27   5.1  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    27   5.1  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    27   5.1  
Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 203 LTSFTLKTSKRMLTALNSQVCI*IALL 123
           L+  T+K  K+ L ALN Q CI +A+L
Sbjct: 226 LSPQTIKMQKQFLRALNIQTCIPLAIL 252


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 368 YVLSIHTLYTINFV-LKILFHKITLEYSHIITQCNND*FANHKRT 237
           Y+L  HTL+TI F+   I+   IT+ Y HI  +  +D   N  RT
Sbjct: 560 YLLRGHTLFTILFLSASIIIFVITVTY-HIKVRRQHDIIHNELRT 603


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 368 YVLSIHTLYTINFV-LKILFHKITLEYSHIITQCNND*FANHKRT 237
           Y+L  HTL+TI F+   I+   IT+ Y HI  +  +D   N  RT
Sbjct: 560 YLLRGHTLFTILFLSASIIIFVITVTY-HIKVRRQHDIIHNELRT 603


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 248 GWRTNHCYIE 277
           GW+T+HCYIE
Sbjct: 93  GWKTHHCYIE 102


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 248 GWRTNHCYIE 277
           GW+T+HCYIE
Sbjct: 85  GWKTHHCYIE 94


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 248 GWRTNHCYIE 277
           GW+T+HCYIE
Sbjct: 93  GWKTHHCYIE 102


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 248 GWRTNHCYIE 277
           GW+T+HCYIE
Sbjct: 93  GWKTHHCYIE 102


>Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical
           protein T08G3.10 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 231 IQCAFMVGELIIVTLSDYMTIFKCNFMKQNF*NKI-NCV*SMNG-QYIISGMEVILSTG 401
           IQC   V E + +  +  M + +C F+K     KI   V S NG + +IS    IL +G
Sbjct: 115 IQCITKVTERLAIWYAVAMAVLRCLFIKLPINKKIYGLVHSKNGIRLLISVTAAILPSG 173


>Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical
           protein C30H6.2 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 452 HTYSPEDNSEKYHKYAAARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEY 291
           H++  +D+           R+N L  +  VLSI+ LY + F +   + K  L Y
Sbjct: 100 HSHHHDDSDRIMWYTVTPARKNLLRLSVIVLSIYILYFVEFFM--FYRKTHLHY 151


>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 365 HNKWNGGNSVDGQP 406
           + KWN GN VDG+P
Sbjct: 382 YRKWNLGNGVDGKP 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,280,892
Number of Sequences: 27780
Number of extensions: 235130
Number of successful extensions: 576
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)