Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I23
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41300.1 68418.m05019 receptor-like protein kinase-related co...    31   0.51 
At1g26330.1 68414.m03211 hypothetical protein                          30   0.90 
At5g41280.1 68418.m05017 hypothetical protein contains Pfam prof...    29   2.1  
At2g02550.1 68415.m00194 exonuclease family protein contains sim...    29   2.1  
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain...    28   2.7  
At4g30370.1 68417.m04315 zinc finger (C3HC4-type RING finger) fa...    27   6.3  
At1g67110.1 68414.m07635 cytochrome P450, putative similar to Cy...    27   6.3  
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t...    27   8.4  

>At5g41300.1 68418.m05019 receptor-like protein kinase-related
           contains weak similarity to receptor-like protein kinase
           homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26
          Length = 287

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 237 IVYFLHCTVCFSDKFYT*NFETHVNS 160
           I+Y++ C V +SDKF+   FE   NS
Sbjct: 119 IIYYIDCMVRYSDKFFLSTFEKKPNS 144


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 7   ASISRSTNPLLK-FTPFACQNSVKQSCRSN*LERFSNKSFNKAIYIH 144
           +S+     P +K F P    N +  SC+S  L +FS + F+K +  H
Sbjct: 250 SSLPSEKPPQMKIFIPIQETNRLPDSCKSKPLSKFSEEVFHKELLFH 296


>At5g41280.1 68418.m05017 hypothetical protein contains Pfam
           profile: PF01657 domain of unknown function
          Length = 286

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 237 IVYFLHCTVCFSDKFYT*NFETHVNS 160
           I+Y+  C V +SDKF+    ET  N+
Sbjct: 116 IIYYFSCMVRYSDKFFLSTLETKPNT 141


>At2g02550.1 68415.m00194 exonuclease family protein contains
           similarity to exonuclease I [Homo sapiens]
           gi|4249655|gb|AAD13754
          Length = 200

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 455 AHTYSPEDNSEK-YHKYAAARRQNYLHSTYYVLSIHTLYTINFVLKILFHKITLEYSHI 282
           A   +P+D   K   K A    Q+++H T YV+ +   Y  N V++ L H    E S++
Sbjct: 108 AQLMAPDDPKRKDKEKNATKIFQSHIHITPYVIHVFIEYVYNQVIEELQHLNVPEVSNL 166


>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 174

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 4   SASISRSTNPLLKFTPFACQNSVKQSCRSN*LERFSNKSFNKAIYIH 144
           S+S SRS +P    TP  C + V++S R+N      + S N+  +I+
Sbjct: 127 SSSKSRSRSPPSPSTPETCPSCVERSIRNNGCYVHRSPSHNQLYFIN 173


>At4g30370.1 68417.m04315 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 176

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 23  PQTPY*NLRHSPVKILSNKAAGLIN*KDSQIKVLIRQFIYI 145
           P  P  N ++ P KILSN   GLI      I V I  FI+I
Sbjct: 19  PPPPKANTKNLPTKILSNFLIGLI-----MIPVAITAFIFI 54


>At1g67110.1 68414.m07635 cytochrome P450, putative similar to
           Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus];
          Length = 512

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 413 KYAAARRQNYLHSTYYVLSIHTLYTINFVLKIL 315
           K++ A  +NY H+   VL+I   Y +  VLK L
Sbjct: 478 KFSFAISENYRHAPIVVLTIKPKYGVQLVLKPL 510


>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02847: MA3 domain
          Length = 263

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 187 SVKLVRKTNGTVKEIYNVRL 246
           +V+L RKTN  ++E +NVRL
Sbjct: 101 TVELSRKTNSLLEEYFNVRL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,259,519
Number of Sequences: 28952
Number of extensions: 198557
Number of successful extensions: 378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)