Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I22
         (604 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4R7V0 Cluster: Testis cDNA clone: QtsA-14323, similar ...    38   0.24 
UniRef50_Q7QZA6 Cluster: GLP_567_29376_33209; n=1; Giardia lambl...    32   9.1  
UniRef50_P63936 Cluster: Probable 3-hydroxyisobutyrate dehydroge...    32   9.1  

>UniRef50_Q4R7V0 Cluster: Testis cDNA clone: QtsA-14323, similar to
           human histone deacetylase 1 (HDAC1),; n=1; Macaca
           fascicularis|Rep: Testis cDNA clone: QtsA-14323, similar
           to human histone deacetylase 1 (HDAC1), - Macaca
           fascicularis (Crab eating macaque) (Cynomolgus monkey)
          Length = 163

 Score = 37.5 bits (83), Expect = 0.24
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 356 PVHRDINIILINFHTTCNALLLTTSSELTQMMTFCNVL 469
           P+H D+ ++LI FH+TC+       +EL Q++ +  VL
Sbjct: 7   PIHSDVRLLLIKFHSTCHRTTSRQLTELKQVVKYWTVL 44


>UniRef50_Q7QZA6 Cluster: GLP_567_29376_33209; n=1; Giardia lamblia
            ATCC 50803|Rep: GLP_567_29376_33209 - Giardia lamblia
            ATCC 50803
          Length = 1277

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 196  RLLVDVAASGPRAPLGASH--TDQIALSLAGHVVTFSLFIHAHRYSADAHTRED 41
            RLL +  ASGP  P  A++   D   ++  G+ V++ L + +H Y     T  D
Sbjct: 1012 RLLANTGASGPTFPANATYYGIDIAVVNAIGYAVSYLLLLSSHEYKLLPKTSPD 1065


>UniRef50_P63936 Cluster: Probable 3-hydroxyisobutyrate
           dehydrogenase; n=25; Bacteria|Rep: Probable
           3-hydroxyisobutyrate dehydrogenase - Mycobacterium bovis
          Length = 294

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 181 VAASGPRAPLGASHTDQIALSLAGHV-VTFSLFIHAHRYSADA 56
           VAA+G  APLG+   D  A   A H  + FS  IH  R  ADA
Sbjct: 252 VAATGATAPLGSHAADIYAKFAADHADLDFSAVIHTLRARADA 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,234,894
Number of Sequences: 1657284
Number of extensions: 9097304
Number of successful extensions: 22884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22870
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)