Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I22
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    28   5.0  
07_01_0665 + 5001599-5003149                                           27   8.7  

>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 AATRGVARARCFPVHRDINIILINFHTTCNALL 418
           A TR +A  RC PV  D  I+   ++  CN +L
Sbjct: 188 ALTRALAEKRCIPVFLDEEIVHQYYNGYCNNIL 220


>07_01_0665 + 5001599-5003149
          Length = 516

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 402 VVWKFINIILISR*TGKHRARATPRVAASAGPFTT 298
           VVW  +  + +    G+H AR   R+AA   P+ T
Sbjct: 28  VVWNSLQSLQLHHLVGRHLARHARRLAAVVDPYLT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,604
Number of Sequences: 37544
Number of extensions: 246699
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)