Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I22
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_2778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 179 RCVRSAGTARCVS-HGSDRVVTCRSCCY 99
           RCV   G ARCV+ +G  R VT   C +
Sbjct: 477 RCVTMNGCARCVTMNGCPRCVTMNGCAH 504


>SB_2778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 310 SSTSGDTRRRPRPVFPCSPGYQYYINKLPYNM 405
           SS     R + +P+ PC+P Y    N  PY++
Sbjct: 10  SSKQARVRIQSKPLIPCTPVYSLIHNLHPYDL 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,351
Number of Sequences: 59808
Number of extensions: 315380
Number of successful extensions: 809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)