Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I22
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72517-5|CAA96693.1|  545|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    27   7.8  

>Z72517-5|CAA96693.1|  545|Caenorhabditis elegans Hypothetical
           protein T28F4.2 protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 147 APSGARGPDAATSTNKRIHNATPSNNFYINTYYIYSIFLQSFS-KLSTE 290
           A S   G  + +STN +  + +    +Y N   I  +FL++ S +L TE
Sbjct: 392 ATSSTAGVGSCSSTNSKFSSKSDCQKWYNNNGMIIQVFLETLSYELYTE 440


>U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical
           protein F47C10.7 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 306 FTTN-YIRYLVY*NFVKKYYKCNMYLYKN 223
           F TN  I+ ++Y N+ K+Y  CN Y  +N
Sbjct: 104 FATNALIQEVLYLNYTKRYKLCNFYTSEN 132


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 306 FTTNYIRYLVY*NFVKKYYKCNMYLYKNYLREL 208
           F  NYI +++    +K  + CN +L+ N  R L
Sbjct: 562 FMLNYIAFMLSSELMKSVHMCNTFLFVNLTRLL 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,547
Number of Sequences: 27780
Number of extensions: 224114
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)