Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I22
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051...    28   4.1  
At2g27700.1 68415.m03356 eukaryotic translation initiation facto...    28   4.1  
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    27   9.6  

>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
           TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
           [Synechococcus sp. PCC 7002]
          Length = 366

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 182 RRCVRSAGTARCV-SHGSDRVVTCRSCC 102
           + C++S    RCV  HGS R V C +CC
Sbjct: 49  KTCMKSKAKGRCVICHGSGR-VDCFNCC 75


>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|P39730 Translation initiation factor IF-2
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00009: Elongation factor Tu GTP binding domain,
           PF03144: Elongation factor Tu domain 2
          Length = 479

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 325 DTRRR-PRPVFPCSPGYQYYIN 387
           DT+ + PRP+F  +PGY++Y N
Sbjct: 92  DTKLKVPRPLFIDTPGYEFYTN 113


>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 360 TGKHRARATPRVAASAGPFTTN 295
           +GKH+   TP  A + GP TT+
Sbjct: 139 SGKHKDEQTPATATTTGPATTD 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,926,031
Number of Sequences: 28952
Number of extensions: 192912
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)