Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I21
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 28 0.99
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 28 1.3
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 28 1.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.0
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 5.3
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 25 7.0
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 7.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 7.0
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 25 7.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.2
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 9.2
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 25 9.2
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 0.99
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 RVRRDALGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 251
R+ RD + N DGTSGA + F G K + + S D+++ K AA VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499
Query: 252 V 254
+
Sbjct: 500 L 500
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 231 AGVALDNVNGHGVSLTDTHIPG 296
A A+DN+ G SL H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 453 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 584
+KI ASAT DFI N+ +N F S DTS++ N GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 238 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPSASLRTLELVN 62
TP + APS S ++ + ++ P + T +P+P + S S +PS SLR L
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
Query: 61 SSGSS 47
S S
Sbjct: 359 KSAKS 363
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 607 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 443
DF K N L ++ FSF SRE S R +K + +A+ P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 576 FKKFDTPFMKSSWETNFGFSL 638
F+K++T F+KS + N G SL
Sbjct: 38 FEKYETSFLKSLFNGNLGLSL 58
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 270 SLTDTHIPGFGDKVTAAGKVNLFHNDXHDTTAKAFATRNMPDIAYVPNFNTVGGGID 440
+LTD GFGDK + AGK N+ +TT+ ++ N D AY P ++ I+
Sbjct: 261 TLTDA---GFGDKSSTAGKHNV------ETTSPPSSSPNSDD-AYSPQVDSYSPSIN 307
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 426 GGGIDYMFKDKIGASATAAHTDFINRNDYSL---DGKLNLFKSPDT-SVDFNAGFKKFDT 593
GG ++ KD T + + +N S D K+ L K P T + + + +FD
Sbjct: 63 GGPCEFEVKDLDTKFGTKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDN 122
Query: 594 PFMKSSWETN 623
P M S W +N
Sbjct: 123 PEMLSQWASN 132
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 259 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 113
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 163 SLPAKGTLTPAPEVPSELSVRAPSASLRTLELVNS 59
S+P G P VP + S +A SLRT ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 492 FINRNDYSLDGKLNLFKSPDTSVD 563
F N Y G N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/79 (21%), Positives = 31/79 (39%)
Frame = +3
Query: 381 RNMPDIAYVPNFNTVGGGIDYMFKDKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSV 560
R+ + +YV + +K + +A TD+++ +D S + +
Sbjct: 248 RSSNEASYVEKDESSNSDDSISYKRRRSRNAANRITDYVD-SDLSESSMKEKQSKIEKYM 306
Query: 561 DFNAGFKKFDTPFMKSSWE 617
+ K F PF K SWE
Sbjct: 307 KSDKSSKNFKPPFQKKSWE 325
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 262 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELSVRAPSAS 86
+PF S P PS+ LV P LT+ + G L+ A +PS S + +S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCSCPSVKSS 325
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 420 TVGGGIDYMFKD-KIGASATAAHTDFIN 500
+VG I Y +D K+ TA+H DF+N
Sbjct: 25 SVGRAIRYCKEDGKVEGCETASHVDFLN 52
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 640 ESENPKLVSQEDFMKGVSNFLKPALKSTEVSGLLKRF 530
ESE+P + S D +S TE S +++RF
Sbjct: 237 ESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,802
Number of Sequences: 5004
Number of extensions: 55834
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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