Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I21
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 33 0.25
04_02_0006 + 8455219-8457469,8457560-8457924 29 3.1
07_01_0310 + 2209084-2209554 28 5.4
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 5.4
12_02_0412 - 18799217-18801061 28 7.2
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 28 7.2
01_01_0070 - 542603-542686,542803-543441 28 7.2
12_02_0591 + 20864861-20867329 27 9.5
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119... 27 9.5
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 9.5
05_04_0113 + 18085705-18085833,18086442-18086885 27 9.5
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169... 27 9.5
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 32.7 bits (71), Expect = 0.25
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -1
Query: 298 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 119
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 118 SELSVRAPSAS 86
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 331 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 158
F P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.3 bits (60), Expect = 5.4
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Frame = -1
Query: 328 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPA- 152
T+PA V L P P + T P A P P + K + L S+PA
Sbjct: 80 TVPA-VALPPMPAVPAVPTATLPPMPAVPAVPNAVLPPIPAVPK----VTLPPMPSIPAV 134
Query: 151 -KGTLTPAPEVPSELSVRAPSA 89
K TL P P VP PSA
Sbjct: 135 PKVTLPPMPSVPMPFLAPPPSA 156
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 259 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPSAS 86
P T+S++T AV+ + + + + T LPA T APE +P+ S A S+S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTSAPANSSS 368
>12_02_0412 - 18799217-18801061
Length = 614
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 440 VYSATDSVEVGYISDIWHISGGESLRCGVV 351
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 375 ATRNMPDIAYVPNFNTVGGGIDYMFKDKIG 464
A N P +A N N G ++Y+F DK G
Sbjct: 385 AESNTPALARTSNLNEELGQVEYIFSDKTG 414
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = -1
Query: 271 LTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF--LSLPAKGTLTPAPEVPSEL-SVR 101
+TP P T +P A P L + P+A +LP T P E P+EL
Sbjct: 100 VTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 100 APSASLRTLELVNSSG 53
AP+ S N G
Sbjct: 160 APTKSKNKHRKKNKRG 175
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 323 AGSCHLVSEPGDVCIRETY 267
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>11_06_0759 +
27008772-27009571,27010457-27010576,27011683-27011957,
27012516-27013783
Length = 820
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 36 IQHYEEPELLTSSRVRRDALGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLT 203
++H + E+ V+ L L G G GVK P GN + +GS+D T
Sbjct: 507 VRHTQVKEI-PKELVQLPKLVCLLFGQSGFHG-GVKFPVGGNPSKSLKVLGSIDST 560
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -3
Query: 572 GVEIDRGVRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNL-IFEHIVYSATDSV-EVGYIS 399
GVE+ GV+ LE +V+ V+ T + R+ +L + ++Y A D + E+ Y
Sbjct: 34 GVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVLRELLYDAEDVMDELDYYR 93
Query: 398 DIWHISGGESLRCGVVVIVVEEIHFAGS 315
I GE C E +A S
Sbjct: 94 LQQQIEKGEG--CSAAAANYPEASYASS 119
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +3
Query: 48 EEPELLTSSRVRRDALGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 200
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 201 TNRQKLGAATAGVALD 248
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>02_05_0607 -
30315982-30316215,30316688-30316831,30316902-30316989,
30317829-30317934,30318398-30318552,30318630-30318699,
30319940-30320106,30320827-30320894,30322764-30322867,
30322937-30323107,30323113-30323238,30323496-30323663,
30323725-30323908,30324139-30324534
Length = 726
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = -3
Query: 551 VRTLEEVQLSVQGVIVTIDEVRVSGGR*CTNLIFEHIVYSATDSVEVGYISDIWHISGGE 372
+RT+ E + + VI+ ID G ++L++ I A V +SD+ SGG
Sbjct: 457 IRTVRESE-KYKAVILRIDSP--GGDALASDLMWREIRLLADTKPVVASMSDV-AASGGY 512
Query: 371 SLRCGVVVIVVEEIHFAGSCHLVS 300
+ VIV E++ GS +V+
Sbjct: 513 YMAMAAPVIVAEKLTLTGSIGVVT 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,860,051
Number of Sequences: 37544
Number of extensions: 405585
Number of successful extensions: 1313
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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