Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I21
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               30   1.8  
SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    29   2.4  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   3.2  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)               28   5.6  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   5.6  
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)             28   5.6  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 325 LPAAVT-LSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 149
           LPAAV  +   P     V+ TP    L  ATP VA      LVK+K P  L I      K
Sbjct: 256 LPAAVPPIKTKPAAPSPVKATPTVAPLVKATPMVAP-----LVKAKLPQPLRILYICEEK 310

Query: 148 GTL 140
           GT+
Sbjct: 311 GTV 313


>SB_8875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 257 RPRSKSHGYTHPRVRRQGDSC 319
           RP S+SHG  HPRV    D+C
Sbjct: 92  RPTSQSHGNRHPRVPIDKDNC 112


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 297 FGDKVTAAGKVNLFH---NDXHDTTAKAFATRNMPDIAYVPNFNTV 425
           FGDK   A  +  FH   ND  D +  +  TR + D++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 272  SHGYTHPRVRRQGDSCRQSESLPQRXPRHHSEGFRHQKYARYRLCTQLQHC 424
            +H  T+PR R Q D C     LP+  P   +       +A Y  C +L HC
Sbjct: 1039 AHYLTYPR-RDQRDHCALPR-LPKTRPLRTTSLTPEATFAHYLTCPRLDHC 1087


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 260 PRSKSHGYTHPRVRRQGDSC 319
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 260 PRSKSHGYTHPRVRRQGDSC 319
           P + SH YTH  VR  GD+C
Sbjct: 260 PHALSHNYTHLAVRYYGDAC 279


>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 325  LPAAVTL-SPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAK 149
            LP  V+L S  PG       TP P +L+S TP+  +    L  K+  P++L+   S P  
Sbjct: 1042 LPVPVSLTSKTPGPVSLTSKTPGPVSLTSKTPSPVS----LTSKTPGPVSLSSKTSGPVS 1097

Query: 148  GT-LTPAP 128
             T  TP P
Sbjct: 1098 LTSKTPGP 1105


>SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)
          Length = 486

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
 Frame = +3

Query: 273 LTDTHIPGFGDKVTAAGKVNLFHNDXHDTTAKAFATR-NMPDIAYVPNFNTVGGGIDYMF 449
           L+ T +   G + T   K  +F ND  D   + F +  ++      P+  T         
Sbjct: 113 LSSTSLTSLGAE-TPLTKKRVFENDA-DLAMEHFDSHASLSSSTVEPSLTTQENDSTSEV 170

Query: 450 KDKIGASATAAHTDFINRNDYSLDGKLNLFKSPD----TSVDFNAGFKKFDTPFMKSSWE 617
           + +  +S      D + + D      ++  +S +    T VD  A F+K  +P +K+ W 
Sbjct: 171 ESEAASSVVDIRRDSMTQTDGLALASVSRIRSEENELNTKVD-TAPFRKGTSPILKNKWY 229

Query: 618 TNFGFS 635
           TN  FS
Sbjct: 230 TNKRFS 235


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 3/136 (2%)
 Frame = +3

Query: 36  IQHYEEPELLTSSRVRRDALGALTLNSDGTSGAGVKVPFAGNDKNIVS-AIGSLDLTNRQ 212
           I   +EP   T+    R   G +   +  TS  G   P    ++ ++     +  +T+  
Sbjct: 245 ISRTKEPAENTTEATMRPGAGEILTTTRKTS-VGTDEPRRSTEQFVLGRTTRASQVTSVT 303

Query: 213 KLGAATAGVALDNVNGHGVSLTD-THIPGFGDKVTAAGKVNLFHNDXHDTTAKAFATRNM 389
            L A T+  +     G   S T  T IPG G    + GK ++  N  H T+  A      
Sbjct: 304 TLEADTSTASPPLTKGPDGSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGK 363

Query: 390 -PDIAYVPNFNTVGGG 434
             +   VP   T G G
Sbjct: 364 GEEPTIVPEMTTQGAG 379


>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 646

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 24/95 (25%), Positives = 45/95 (47%)
 Frame = +3

Query: 63  LTSSRVRRDALGALTLNSDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQKLGAATAGVA 242
           L   R  +DA   +    D T    ++  F  N  + V   G ++   R  + + T  ++
Sbjct: 398 LGDPRYMKDADKVVKKMVDQTHSNNLR-KFIDNRTHPVKYYGPINY--RTDVTSGTTHLS 454

Query: 243 LDNVNGHGVSLTDTHIPGFGDKVTAAGKVNLFHND 347
           + + +G+GVSLT +    FG K+ +  K+ + +ND
Sbjct: 455 VVDADGNGVSLTSSINKYFGSKIRSK-KLGIIYND 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,387
Number of Sequences: 59808
Number of extensions: 436098
Number of successful extensions: 1413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)