Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I21
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81039-7|CAB02778.1|   60|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 183  IGSLDLTNRQKLGAATAGVALDNVNGHGVSLTDTHIPGFGD 305
            IG +DL+    LG A     LDNV+ HG+ L     P  GD
Sbjct: 1832 IGKVDLSQNSSLGMAKL---LDNVSVHGILLDSIMDPTVGD 1869


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 135 GVKVPFAGNDKNIVSAIGSLDLTNRQ 212
           GV VPF G DK+I++     D T+RQ
Sbjct: 237 GVAVPFPGADKSIINRSQYYDATSRQ 262


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 135 GVKVPFAGNDKNIVSAIGSLDLTNRQ 212
           GV VPF G DK+I++     D T+RQ
Sbjct: 237 GVAVPFPGADKSIINRSQYYDATSRQ 262


>Z81039-7|CAB02778.1|   60|Caenorhabditis elegans Hypothetical
           protein C25D7.9 protein.
          Length = 60

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 365 RCGVVVIVVEEIHFAGSCHLVSEPGDVCIRETYSVAVYII-QCHSSGCSA 219
           R GV V  +E+I  +G C  +S P  VC+  T +  + ++ Q +S+  SA
Sbjct: 11  RWGVSVDALEKIIDSGVCPRLSSPQIVCVWPTTTQHILLVAQTNSTSVSA 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,859
Number of Sequences: 27780
Number of extensions: 316666
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)