Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I21
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 31 0.65
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo... 29 2.6
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 3.4
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ... 28 4.5
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 28 4.5
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 28 6.0
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 28 6.0
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 28 6.0
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 27 7.9
At2g43250.1 68415.m05375 expressed protein and genefinder 27 7.9
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con... 27 7.9
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 27 7.9
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = +2
Query: 218 RRCNRWSGTG*CKRPRSKSHGYTHPRVRRQGDSCRQSESLPQRXP 352
R C GTG R RSKS T PR RR R+S S R P
Sbjct: 112 RECRNRGGTG---RRRSKSRSRTPPRYRRSPSYGRRSYSPRARSP 153
>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
identical to DegP protease precursor GB:AF028842 from
[Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
7094-7098 (1998))
Length = 439
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = -1
Query: 289 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 110
+C SV L+ F+L +A+PAV + S +V + + + ++ TP+ + L
Sbjct: 83 LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138
Query: 109 SVRAPSASLRTLELVNSSGS 50
+VR + +L LE+ SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 254 KRPRSKSHGYTHPRVRRQGDSCRQSESLPQRXPRHHSEGF 373
+ PR +SHG ++ +GD +SE + RH+ + F
Sbjct: 253 RSPRGRSHGRSYREDSYEGDHWNESERRREYEDRHNQDHF 292
>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 1038
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 423 VGGGIDYMFKDKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNAGFKKFDTPFM 602
V GG + + + AS A D I D+S+DG+ + + S V F AG P +
Sbjct: 745 VTGGANIPALNNLLASFGIAFGDKILNGDFSIDGEQSRYASGTNIVRFPAGGFLHTFPLL 804
Query: 603 KSS 611
SS
Sbjct: 805 DSS 807
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 316 AVTLSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 194
+++ S NPG+C P P S AT P + P+ + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 27.9 bits (59), Expect = 6.0
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Frame = -1
Query: 310 TLSPNPGMCVSVRLTPWPFTLSS--ATPAVAAPSFCLLVKSKEPIALTIFLSLPAK---- 149
T +P+ G S TP SS ATP+ AP+ L S P +F S PA
Sbjct: 409 TSNPSSGAGFSFLNTPASGPSSSLFATPSSTAPTSSLFGPSPTPTQTPLFGSSPASTFGS 468
Query: 148 -----GTLTPAPEVPSELSVRAPSASLRTLELVNSS 56
G TP+ +PS+ P + + SS
Sbjct: 469 TQSLFGQTTPSLTMPSQFGGATPGSGASFGSMTKSS 504
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = -1
Query: 298 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 119
+P V R +P P SS P +PS + SK+P ++ S + P P +P
Sbjct: 83 SPAKFVPPRFSPSPAP-SSVYPPSTSPS---VASSKQPSVMST--SSNRRRKQQPKPRLP 136
Query: 118 SELSVRAPSASLRT 77
LS +PS+S R+
Sbjct: 137 HILSESSPSSSPRS 150
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
protein contains Pfam profile PF00226: DnaJ domain
Length = 2554
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 325 LPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK 191
L A+ LS G+C LTP+ T + A+ P L+K +
Sbjct: 1804 LQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKDE 1848
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 319 AAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK--EPIALT 173
++++ SP+P + + P+P +L + P+ ++ L+ S EPI T
Sbjct: 366 SSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTELISSSSIEPITTT 416
>At2g43250.1 68415.m05375 expressed protein and genefinder
Length = 625
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/59 (28%), Positives = 22/59 (37%)
Frame = +3
Query: 321 GKVNLFHNDXHDTTAKAFATRNMPDIAYVPNFNTVGGGIDYMFKDKIGASATAAHTDFI 497
G +NLF H AF +P A P F + G + K + A A T I
Sbjct: 460 GSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIRAVTHSI 518
>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
contains F-box domain Pfam:PF00646; contains TIGRFAM
TIGR01640: F-box protein interaction domain; similar to
S locus F-box (SLF)-S2-like protein (GI:13161528)
[Antirrhinum hispanicum]
Length = 392
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 289 MCVSVRLTPWPFTLSSATPAVA 224
M +S WPFTLS TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 328 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 215
+LP + N + S LTP FT ++A PA P+
Sbjct: 342 SLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPA 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,267
Number of Sequences: 28952
Number of extensions: 303852
Number of successful extensions: 922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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