Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I20
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     26   7.1  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        26   9.4  
SB_43761| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_12504| Best HMM Match : NAD_kinase (HMM E-Value=0)                  26   9.4  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         26   9.4  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 262 FYVFSHVYIITFFVSYIHIILDSYFYT 342
           FY++ ++YI  +   YI+I   +Y YT
Sbjct: 9   FYIYIYIYIYIYIYIYIYIYTYTYTYT 35



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 244 IIIH*LFYVFSHVYIITFFVSYIHIILDSYFYT 342
           I I+   Y++ ++YI T+  +Y +    +Y YT
Sbjct: 13  IYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYT 45


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 231 WLKENNHSLTFLCIFSCLYNHIFCIIY 311
           WLK+N       C+  C   H  C +Y
Sbjct: 38  WLKQNCKKTCDFCVKPCFDKHTKCAVY 64


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 171 ILWPTFSNS*KGFHGAAETVPIAKTQATT 85
           +L    +N     H A +T+PI KT ATT
Sbjct: 652 VLLDKINNMETTHHPAVQTIPIIKTSATT 680


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 81  CWLSLASSLWGPFRRRRGIP 140
           CW+ L S LW P  + + +P
Sbjct: 530 CWIRLMSRLWMPVMKNKWMP 549


>SB_43761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 205 DGWTSTYDCVSHSLANFLQFLEGIP 131
           D W S Y+ + +SL   ++F+ G+P
Sbjct: 201 DQWQSVYEEIQNSLGCKIKFIPGLP 225


>SB_12504| Best HMM Match : NAD_kinase (HMM E-Value=0)
          Length = 295

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 46  INIKHEFH*NYFVGCRLRLRYGDRFGG 126
           + + H    NY+  CR +L +G R GG
Sbjct: 267 LRLIHPLDHNYYEVCRNKLGWGSRLGG 293


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 82  VGCR-LRLRYGDRFGGAVESLLGIGESWPENER--RSHKCWSSRRYSG 216
           V CR L  RY   FG    S+ G G  W +N R   + K  S  R++G
Sbjct: 499 VVCRMLGYRYARTFGSVGGSIPGSGTIWMDNVRCNGTEKSLSECRHNG 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,268,842
Number of Sequences: 59808
Number of extensions: 175608
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)