Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I18
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   0.89 
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.3  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 370 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 272
           V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 405 VTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 346 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 206
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = -2

Query: 319  FFSQPSNGP----SGNYEPISTGPAFVDF 245
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 289 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 197
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 365 WNSVCGSHGQYGEEEKHESFHCRIVSELSP 454
           W S+C +H +Y    KH++   + V  +SP
Sbjct: 449 WGSICLAHIRYRAAMKHQNRSLKEVGFVSP 478


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 313 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 224
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 380  GSHGQYGEEEKHESFHCRIVSELSPRAEFG 469
            G  G     E   S HC I+SE   RA +G
Sbjct: 1174 GGDGVIRHFEFRRSMHCSILSERRSRAPYG 1203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,090
Number of Sequences: 5004
Number of extensions: 41642
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)