Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I18
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304...    31   0.52 
12_02_0219 + 15822050-15824896                                         29   3.7  
03_06_0738 - 35883405-35884006,35884474-35884492                       28   4.9  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   4.9  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   4.9  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   8.5  

>01_06_0486 -
           29729333-29729356,29729856-29730106,29730364-29730466,
           29730571-29730663,29730773-29730905,29731184-29731272,
           29731385-29731553,29731930-29732016,29732388-29732506,
           29732554-29732706
          Length = 406

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 404 EEKHESFHCRIVSELSPRAEFGTRAR*SLCGNEVH 508
           +E H SF+C  V E+S RA F  R    LCG + H
Sbjct: 326 QEGHRSFYCPTVREISGRAHFRCR----LCGGKGH 356


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 450 DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFHRTAIV 349
           D  D +R+ ++ C F+  P WPWL     + T ++
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVI 303


>03_06_0738 - 35883405-35884006,35884474-35884492
          Length = 206

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 557 ISSHALPA*KYSEYXIDELHFHRATISPSCRIRHEETTLTLFDNESFRVFLLRR-IGHGC 381
           + +H +PA +  +      H   A I   CR+  E+T     +    +VF L+R +G   
Sbjct: 63  VRAHGIPAIRPCDAEESAAHALIAVIKKECRVEIEDTNWLDMNRYHAKVFRLKRALGRVR 122

Query: 380 RKQSSIGRQ 354
           ++++S+ ++
Sbjct: 123 KERNSLAKK 131


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 325 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 215
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 SHHGREGCRIAWVDNWDD*NRR 255
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 232 YPPKRYDNPLARGGK 188
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,381
Number of Sequences: 37544
Number of extensions: 271976
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)