Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I17
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    25   2.2  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   3.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   3.9  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   3.9  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   5.2  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    23   9.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    23   9.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    23   9.1  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 289 SSSQLHLVSEID*TKSTELVVFIASYGYLD 200
           S +Q HL+++ D  K  ++ +F  S  YLD
Sbjct: 112 SENQTHLITKGDNNKIDDVAMFPKSINYLD 141


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 282 PNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSE 175
           PNF +L    EP A+ L F     G+   +  +PS+
Sbjct: 106 PNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSK 141


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 134  NSRVRRQAGALTINSDGTSGAMVKVPITGNENH-KLSALGSVDLT 265
            NS V +  G+ + +S  T      +PI   ENH  L++ GS  ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 107 YEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGN 223
           YE  PE + N   +R A AL  NS+   G+   V    N
Sbjct: 227 YEQDPEGFVNPYSKRGAAALA-NSENNKGSEAGVSAKTN 264


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 145 HPRVSPLLRLILILFDVVTRLFNKH 71
           H RV P L+   +L D +T  +N H
Sbjct: 255 HKRVIPFLQKPNLLMDFLTDAYNSH 279


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 128 WANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQM 274
           W  S  + +     + SDGT    ++V  +  ++ KLS   SV++  Q+
Sbjct: 28  WVRSIRKLKNVCFAMVSDGTCQQALQVVTSPEQSKKLSYGASVNIEGQL 76


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 117 SRSSGLTRGCAGKRVLSLSTLMVPPVLWS 203
           +R S +     GKR+ SL  +  PP+ +S
Sbjct: 213 TRKSSVKMSDLGKRIASLPVVKRPPIQFS 241


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 26  LFLVSVLLVGVNSRY 70
           L+++SVL+VG+N  Y
Sbjct: 269 LYIISVLVVGINLPY 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,086,907
Number of Sequences: 5004
Number of extensions: 18093
Number of successful extensions: 41
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)