Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I17
(292 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0256 + 21331396-21332268 32 0.067
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 0.63
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 26 4.4
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995... 26 4.4
12_01_0707 - 6133561-6133947 26 5.8
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 26 5.8
02_05_0432 + 28936293-28936796,28937382-28939250 26 5.8
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206... 25 7.7
06_03_1100 - 27592526-27592753,27594942-27595070 25 7.7
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 25 7.7
>02_04_0256 + 21331396-21332268
Length = 290
Score = 32.3 bits (70), Expect = 0.067
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -1
Query: 199 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 38
HS I + S + RL AHP P +RLIL+ D + LF A AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 47 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKV 208
L G+ SR V P + ++ Y D+ EQW R R + L I+ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/74 (21%), Positives = 34/74 (45%)
Frame = -1
Query: 238 ELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAV 59
E +++ S+G D+ GG++R S+ P P + I +V RL + A+
Sbjct: 131 EYILYWCSFGPDDYRKGGSVRPSRNSSTKRKTPAGRPHTKRGCICHFIVKRLIAEPSVAL 190
Query: 58 DADQENRH*EQLSE 17
++H +++ +
Sbjct: 191 VIYNHDKHVDKIGK 204
>02_02_0412 -
9950286-9950380,9950530-9951203,9951402-9951580,
9952578-9952633,9953233-9953262,9953820-9953982
Length = 398
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 90 VTTSNSMRISRSSGLTRGCAGKRVLSLSTLMV 185
VT S + + R + GC KRVL+L+ +V
Sbjct: 290 VTQSKELLMPRFDKILSGCTAKRVLTLAKQLV 321
>12_01_0707 - 6133561-6133947
Length = 128
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 112 GSAGAVG*LEGAPASGCSHYQL*WYLRCYGQGTHNWQ*KPQAQCSW 249
GS G G ++G + + W RC G +W +P Q SW
Sbjct: 43 GSDGGCGGIDGG--GWLARQRPWWSRRCGGGCAASWVARPAVQASW 86
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 136 LEGAPASGCSHYQL*WYLRCYG 201
L G P G ++ + YLRCYG
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYG 323
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 77 VEEPGYYIEQYEDQPEQWANSRV 145
V P + + E+ PEQW SR+
Sbjct: 97 VRSPELVVPELEELPEQWRRSRI 119
>11_01_0277 +
2060328-2061061,2061360-2061420,2061560-2061679,
2061947-2062112,2062229-2062635
Length = 495
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 140 RVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQM 274
RVRR+ +DG K I+GN N G ++ Q+
Sbjct: 259 RVRREKKQQEARNDGLDAQATKDNISGNNNRDFEQHGVINTFTQL 303
>06_03_1100 - 27592526-27592753,27594942-27595070
Length = 118
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -1
Query: 181 IRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENRH*EQLSEH 14
++V ++++L L+ L V + H VD DQ+N H E S H
Sbjct: 42 VQVQRDASKLNNQHARKKYWLLLWFLIVVWVMILTDHFFDVDGDQQNDHAESDSPH 97
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -1
Query: 244 STELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSP 128
ST L + YG L H T + S +L P+ P
Sbjct: 166 STILTAGLPQYGQLGHGTDNEYNIKDSSVKLAYDPQPRP 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,344
Number of Sequences: 37544
Number of extensions: 131115
Number of successful extensions: 339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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