Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I17
         (292 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    30   0.28 
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   1.1  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   28   1.5  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          28   1.5  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.0  
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)               26   4.6  
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)                     26   4.6  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 25   8.0  

>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -1

Query: 187 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 59
           G + V+ +  RL     HPR SPLL+L+    D   VV  LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 214  YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 125
            Y YL H T  T + DS STR+    RV  L
Sbjct: 935  YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 214  YGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLIL 110
            + YL H T  T + DS STR+    RV  L    L
Sbjct: 1156 HAYLHHDTRTTGKYDSYSTRIYTTTRVRQLFHAYL 1190



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 214 YGYLDHSTGGTIRVDSESTRLPAHPRV 134
           + YL H T  T + DS STR+    RV
Sbjct: 752 HAYLHHDTRTTCKYDSYSTRIYTTTRV 778


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 5    HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 184
            HS +   L L   L+ GV    + +++  Y  E ++   E W + R+ + AGAL++ S  
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096

Query: 185  TS 190
             S
Sbjct: 1097 VS 1098


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 270 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 166
           W+V ++EP  LS    + ++ T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 256 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 161
           D +K+ E +  IA++  L+H+  G I  DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831


>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  LVEEPGYYIEQYEDQPEQW 130
           L EEPGYYIE  +  PE W
Sbjct: 210 LDEEPGYYIE--KKAPESW 226


>SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)
          Length = 346

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 128 WANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKL 280
           W   R +  A    +  D T G ++K+P   +  +K S LG    TN+ ++
Sbjct: 48  WKYGRQKMAARRTAMIEDNT-GTVLKIPKKSSAGYKTSKLGMFLATNKRRI 97


>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 674

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 14  MFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPE 124
           + + L  V V +  VN    +   PGY IE +E+ PE
Sbjct: 210 LVSDLLKVVVQVEDVNDNPPVFSMPGYTIEYWEESPE 246


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 62   SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAM 199
            +R   + EP   ++  EDQ E  A+S +R +AG     +D   G +
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCV 1228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,033
Number of Sequences: 59808
Number of extensions: 143920
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)