Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I17
         (292 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   1.6  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    27   2.2  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    27   2.2  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    27   2.2  
At3g57030.1 68416.m06348 strictosidine synthase family protein s...    27   2.2  
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    26   3.8  
At1g56350.1 68414.m06479 peptide chain release factor, putative ...    26   3.8  
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to...    26   5.0  
At5g43990.2 68418.m05382 SET domain-containing protein identical...    25   6.6  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    25   6.6  
At3g27930.1 68416.m03486 expressed protein                             25   6.6  
At5g35715.1 68418.m04271 cytochrome P450 71B8, putative (CYP71B8...    25   8.8  
At5g09540.1 68418.m01105 DNAJ heat shock N-terminal domain-conta...    25   8.8  
At4g24320.1 68417.m03491 hypothetical protein                          25   8.8  
At4g20095.1 68417.m02939 hypothetical protein contains Pfam prof...    25   8.8  

>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 78   LKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPV 194
            ++ L T S+  ++SRS+G   G +  RVL + + +  P+
Sbjct: 3298 VRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSPI 3336


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 258 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 136
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 258 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 136
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 258 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 136
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At3g57030.1 68416.m06348 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 374

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 279 NFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVP 181
           +F+ +V +T  + L LW S P  GT  +  E+P
Sbjct: 231 SFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263


>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Glycine max] GI:5669846; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 373

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 222 LPVMGTLTIAPEVPSELIVRAPACRRTLELAHCSG 118
           L + G L IAPE P E       C + +E AH +G
Sbjct: 98  LSISGNL-IAPESPYEWKCNKDDCHQWIEFAHING 131


>At1g56350.1 68414.m06479 peptide chain release factor, putative
           similar to SP|P28353 Peptide chain release factor 2
           (RF-2). {Salmonella typhi}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 482

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 93  TTSNSMRISR-SSGLTRGCAGKRVLSLSTLMVPPVLWSRYP*LAMKTTSSVLLVQSISLT 269
           TT +++RI    +G+T  C  +R    +      VL SR   L M   +++    + SLT
Sbjct: 365 TTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLT 424

Query: 270 K*SW 281
           + SW
Sbjct: 425 EISW 428


>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 409

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 17  FAKLFLVSVLLVGVNSRYVLVEEPGYYIEQY 109
           FAK  +   LL+ V++ YV  E PG+ +E++
Sbjct: 74  FAKKCVKPKLLLHVSTVYVCGERPGHIVEKH 104


>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 131 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSA 244
           +N  V  +AG     +DGT+  +    +    +HKL+A
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA 256


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 131 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSA 244
           +N  V  +AG     +DGT+  +    +    +HKL+A
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA 233


>At3g27930.1 68416.m03486 expressed protein
          Length = 425

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 271 LVSEID*TKSTELVVFIASYGYLDHSTGGTIRVDSESTRLPAH 143
           L+S+I    S E  +    YG  + S G T+   S +  LP H
Sbjct: 143 LISKITGKSSEEYRIMGLRYGSTNLSVGATVTPFSANNELPKH 185


>At5g35715.1 68418.m04271 cytochrome P450 71B8, putative (CYP71B8)
           nearly identical to Cytochrome P450 71B8 (SP:P58048)
           [Arabidopsis thaliana];
          Length = 433

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 210 GTLTIAPEVPSELIVRAPA 154
           G LTIA +VP ELI   PA
Sbjct: 410 GALTIAKKVPLELIPTLPA 428


>At5g09540.1 68418.m01105 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 280

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 249 PRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 136
           P A S W + P   +L   P+   E  +R   CR+  E
Sbjct: 166 PTATSFWTACPYCFSLFEYPKGYEECTLRCQQCRKAFE 203


>At4g24320.1 68417.m03491 hypothetical protein
          Length = 395

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 59  NSRYVLVEEPGYYIEQYEDQPEQWA 133
           N  Y+   E  +++  Y DQ E+WA
Sbjct: 247 NLPYISPYENAFHLGSYSDQAEKWA 271


>At4g20095.1 68417.m02939 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 249

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 74  LVEEPGYYIEQYEDQPEQWANSRVRRQAGA 163
           LVEEP    E+ EDQ  Q ++S + R   A
Sbjct: 13  LVEEPSQSNEKLEDQRPQESSSSIPRHVWA 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,785,152
Number of Sequences: 28952
Number of extensions: 97678
Number of successful extensions: 261
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)