Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I16
(245 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0092 - 609537-609941,610067-610328,610624-610731,611083-61... 26 4.9
04_04_1129 - 31107892-31110246 26 4.9
01_06_0176 - 27233553-27234588,27235629-27235768 26 4.9
11_06_0179 + 20952070-20955228 25 6.4
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306... 25 6.4
06_01_0382 + 2742946-2743256,2743353-2743522,2743604-2743689,274... 25 6.4
06_01_0226 - 1730931-1731527,1732290-1732469 25 6.4
06_01_1112 - 9157776-9158149,9158248-9161158 25 8.5
05_04_0431 + 21175357-21175655,21175716-21175851,21175859-21176155 25 8.5
04_04_0857 + 28794127-28794786 25 8.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 25 8.5
>05_01_0092 -
609537-609941,610067-610328,610624-610731,611083-611204,
611295-611366,611531-611590,611692-611874
Length = 403
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 91 APRSLSVDSHSRNDSTGLTPPTP 159
AP +L++ H++ + T LTPP+P
Sbjct: 297 APCTLALCCHNKPNPTTLTPPSP 319
>04_04_1129 - 31107892-31110246
Length = 784
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 76 RRIELAPRSLSVDSHSRNDSTGLTPPTP 159
RR+ A LS+ + R STG +PP P
Sbjct: 10 RRLTTAALPLSIAARGRRLSTGPSPPPP 37
>01_06_0176 - 27233553-27234588,27235629-27235768
Length = 391
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 74 GDESNSPRALCRWTPTL 124
G ES +A+CRW P L
Sbjct: 267 GGESEEAKAMCRWLPHL 283
>11_06_0179 + 20952070-20955228
Length = 1052
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 188 PGKKVICSISGVGGVRPVESLREWESTDKERGASSI 81
PG + S G +P ++ +W+ T KE ++S+
Sbjct: 321 PGHSKLHSTGGGTNAKPRVNVAQWKETTKEDSSASV 356
>06_01_0430 -
3058832-3058952,3059590-3059795,3060103-3060294,
3061241-3061287,3062233-3062455
Length = 262
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 142 LTPPTPLIEQITFFPGSYFNYFNYNFQSSTL 234
+TPP L Q+T P S FN F++ ++ L
Sbjct: 87 ITPPPQLPPQLTEIPRSTFN-FDFEYERKIL 116
>06_01_0382 +
2742946-2743256,2743353-2743522,2743604-2743689,
2743806-2743855,2744061-2744128,2744967-2745067,
2745994-2746080,2746636-2746730,2747145-2747274
Length = 365
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 158 GVGGVRPVESLREWESTDK-ERGASSIRLQIK 66
G GG+RP ES+ + ES ++ ER A + + +K
Sbjct: 56 GAGGLRPSESVTKLESLERAERAALAPAVVLK 87
>06_01_0226 - 1730931-1731527,1732290-1732469
Length = 258
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 191 DPGKKVICSISGVGGVRPVESLREWESTDKE 99
D G++ ++ G RP+E REW + +E
Sbjct: 201 DAGERRGGELAAAGAARPIEIRREWATRIRE 231
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +3
Query: 84 RTRP--ALFVGGLPLSQRLDWSYP 149
R RP A+FVG L + Q + W++P
Sbjct: 997 RKRPTDAMFVGDLSIRQWVHWAFP 1020
>05_04_0431 + 21175357-21175655,21175716-21175851,21175859-21176155
Length = 243
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 159 WGRRGKTSRVVARVGVHRQRARGEFDSS 76
WGR GKTS A G RG + SS
Sbjct: 51 WGRMGKTSPPAAADGDDVDSGRGGWGSS 78
>04_04_0857 + 28794127-28794786
Length = 219
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 160 VG*EG*DQSSRCESGSPPTKSAGRVRF 80
VG +G + S S +PP + AGR +F
Sbjct: 19 VGGDGDEDSYMTVSSAPPKRRAGRTKF 45
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 91 APRSLSVDSHSRNDSTGLTPPTPLIEQITFFPGSYFNYF 207
AP S S D+ G PPTP I PG+ Y+
Sbjct: 492 APPSPSSDTSPTTPGGGYYPPTPSIGTSPSTPGTGGGYY 530
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,465,848
Number of Sequences: 37544
Number of extensions: 85806
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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