Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I16
         (245 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)                    31   0.14 
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_36221| Best HMM Match : Rz1 (HMM E-Value=1.2)                       27   1.8  
SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)            27   2.3  
SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)                 26   5.4  
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)                   26   5.4  
SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   7.1  
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_53303| Best HMM Match : Pro-NT_NN (HMM E-Value=7.1)                 25   9.4  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   25   9.4  
SB_33929| Best HMM Match : Pkip-1 (HMM E-Value=3)                      25   9.4  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
          Length = 1033

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 97  RSLSVDSHSRNDSTGLTPPTP-LIEQITFFPGSYFNYF----NYNFQSSTLFN 240
           RS ++   +R+   G+ PP+  +IEQ +FF    F+Y     N  F+ +T+ N
Sbjct: 462 RSTNITWETRSHPDGIAPPSSFIIEQASFFQPGVFSYLTEIKNEGFEQTTIDN 514


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +1

Query: 85   ELAPRSLSVDSHS-----RNDSTGLTPPTPLIEQITFFPGS-YFNYFNYNFQSST 231
            E+ P+ L V+++S     R  +    PPTPL E IT F GS +F  F  + Q  T
Sbjct: 1901 EILPQPLDVNTNSCPTPPREPTPPPPPPTPLPEFITQFKGSLWFEKFYPDAQPDT 1955


>SB_36221| Best HMM Match : Rz1 (HMM E-Value=1.2)
          Length = 205

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 73  WRRIELAPRSLSVDSHSRNDSTGLTPPTPL 162
           WRR  L   SL+VDS  +ND   L+P  P+
Sbjct: 128 WRRRRLGKTSLTVDSSRKNDI--LSPRCPI 155


>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
          Length = 125

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 110 TDKERGASSIRLQIKLKKNDKSK*TFFSRQKKKK 9
           TDKE   S + LQ+++K     + T+FS+ KKK+
Sbjct: 52  TDKE---SDLPLQVQIKSVQIRRVTYFSKYKKKR 82


>SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 140 PVESLREWESTDKERGASSIRLQIKLKKNDKSK*TFFSRQKKKKNT 3
           P  +     S  KER   ++  +++ KKN+ S    F +   KKN+
Sbjct: 85  PTRASTSINSACKERIIKNLNAKVRSKKNENSTPFHFEKNGHKKNS 130


>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
          Length = 458

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 143 RPVESLREWESTDKERGASSIRLQIKLKKNDKSK*TF 33
           R V+ L E E    E+  S +R ++KL +N+KS+  F
Sbjct: 183 RQVKDL-EMEKQSLEKSVSDLREKVKLVENEKSELKF 218


>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 76   RRIELAPRSLSVDSHSRNDSTGLTPPTPLIEQITFFPG 189
            RR EL+P + S    SR     L    P I++I + PG
Sbjct: 888  RRSELSPMASSTPQDSRVKPYQLPAEFPEIDKIRYLPG 925


>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
          Length = 1253

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 103  LSVDSHSRNDSTGLTPPTPLIEQITFFPGSYFNYFNY 213
            L+ + H  N   G  PP P     T F   + ++F+Y
Sbjct: 1071 LTKEPHRWNSGPGQNPPLPTAPPSTPFEAVFADFFDY 1107


>SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 94  PRSLSVDSHSRNDSTGLTPPTPLIE 168
           PR  S+DSH  N ++ L    P +E
Sbjct: 10  PRGSSIDSHEENSTSSLLELVPSLE 34


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 76   RRIELAPRSLSVDSHSRNDSTGLTPPTPLIEQITFFPG 189
            RR EL+P + S    SR +   L    P I++I   PG
Sbjct: 2352 RRSELSPMASSTPQDSRVEPYQLPAEFPEIDKIRHLPG 2389


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 143 RPVESLREWESTDKERGASSIRLQIKLKKNDKSK 42
           +  E L  W+     RG + + + IKLK  DK+K
Sbjct: 237 KTAEKLLLWQ-VKSIRGGAEVAINIKLKLKDKAK 269


>SB_53303| Best HMM Match : Pro-NT_NN (HMM E-Value=7.1)
          Length = 266

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 196 FNYFNYNFQSSTL 234
           FNYF  NFQSS++
Sbjct: 27  FNYFKQNFQSSSI 39


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 196 FNYFNYNFQSSTLFN 240
           FNYF  NF+SS +F+
Sbjct: 27  FNYFKQNFRSSRVFS 41


>SB_33929| Best HMM Match : Pkip-1 (HMM E-Value=3)
          Length = 321

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 196 FNYFNYNFQSSTL 234
           FNYF  NFQSS++
Sbjct: 212 FNYFKQNFQSSSI 224


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 131 SLREWESTDKERGASSIRLQIKLKKNDKSK*TFFSRQKKKK 9
           S RE    DK++      ++IK KK  K K     ++KKKK
Sbjct: 1   SKREINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKK 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,282,592
Number of Sequences: 59808
Number of extensions: 94939
Number of successful extensions: 453
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 59
effective length of database: 13,292,785
effective search space used: 292441270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)