Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I16
         (245 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04030.1 68414.m00390 expressed protein                             28   0.99 
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    27   1.7  
At2g20970.1 68415.m02481 hypothetical protein                          27   1.7  
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi...    27   2.3  
At1g18335.1 68414.m02291 GCN5-related N-acetyltransferase (GNAT)...    26   3.0  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    25   5.3  
At4g00370.1 68417.m00051 sugar transporter family protein contai...    25   5.3  
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    25   7.0  
At4g04690.1 68417.m00685 F-box family protein (FBX15) contains F...    25   7.0  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    25   9.2  
At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putat...    25   9.2  
At2g26950.1 68415.m03232 myb family transcription factor contain...    25   9.2  
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa...    25   9.2  
At2g20100.1 68415.m02348 ethylene-responsive family protein simi...    25   9.2  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    25   9.2  

>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -1

Query: 158 GVGGVRPVESLREWESTDKERGASSIRLQIKLKKNDKSK*TFFSRQKKKKNT 3
           G G + PVE+L +W+S  K +G      + K K++ K    F + Q++K+++
Sbjct: 201 GQGVLNPVENLTQWKSA-KSKG------RTKQKQSQKENSNFIADQEEKRDS 245


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +1

Query: 19  FCREKNVYFDLSFFFNLIWRRIELAPRSLSVDSHSRNDSTGLTPPTPLIEQITFFPGSYF 198
           FCR  +    L  F +++ R +EL   SL+    S  D+ GL     + EQI  F   + 
Sbjct: 392 FCRNGHGLKALKLFTDMLQRGVELTDFSLT----SAVDACGLVSEKKVSEQIHGFCIKFG 447

Query: 199 NYFNYNFQSSTL 234
             FN   Q++ L
Sbjct: 448 TAFNPCIQTALL 459


>At2g20970.1 68415.m02481 hypothetical protein
          Length = 373

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
 Frame = +1

Query: 13  FFFCREKNVYFDLSFFFNLIWRR---IELAPRSLSVDSHSRNDSTGLTPPTPLIEQITFF 183
           F+   E     D  F    +WR    + +   S+ +  H       + PP P   +    
Sbjct: 82  FYLAYEYYKLLDRGFELTFLWRLTVFLSVVIHSIYMFEHFLRSHQVVPPPPPPQSKSDET 141

Query: 184 PGSYFNYFNYNFQSSTLF 237
           PG+Y N  +Y F   + F
Sbjct: 142 PGNYINRSSYCFSIISCF 159


>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminus)
          Length = 961

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 94  PRSLSVDSHSRNDST-GLTPPTPLIEQITFFPGSYFNYFNYNFQSSTLF 237
           P+  + + HS   S  GL PP P+      +  S   +++ NFQSS +F
Sbjct: 361 PKIATGEVHSTFQSPHGLAPP-PMYTSTAAYMTSLSPFYHQNFQSSGMF 408


>At1g18335.1 68414.m02291 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 269

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 140 PVESLREWESTDKERGASSIRLQIKLKKNDK 48
           P ESL+ W + + E   SS+   + LKK  K
Sbjct: 5   PTESLQTWRTNETEGRESSVWRAMDLKKRRK 35


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 191 DPGKKVICSISGVGGVRPVESLREWE 114
           DP KK++  + G+G      S++ WE
Sbjct: 286 DPEKKILYMVGGIGSNGICRSIKIWE 311


>At4g00370.1 68417.m00051 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 541

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +3

Query: 81  NRTRPALFVGGLPLSQRLDWSYPSYPTYRTNYFFSWII 194
           N  R  + +  LP+SQ  +WS  +    ++++F+ +++
Sbjct: 146 NMDRVNMSIAILPMSQEYNWSSATVGLIQSSFFWGYLL 183


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 132 LDWSYPSYPTYRTNY 176
           LDW YPS  T  TN+
Sbjct: 137 LDWEYPSSATEMTNF 151


>At4g04690.1 68417.m00685 F-box family protein (FBX15) contains
           F-box domain PF:00646
          Length = 378

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 84  RTRPALFVGGLPLSQRLDWSYPSYPTYRTNYF 179
           RTR A      P+++++ W  P    Y T+YF
Sbjct: 114 RTREANLAVWNPVTKKIKWIEPLDSYYETDYF 145


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 137 VESLREWESTDKERGASSIRLQIKLKKNDK 48
           V  + E E T +ERG     L  KL+ NDK
Sbjct: 793 VARISELEKTMEERGTELSALTQKLEDNDK 822


>At5g12860.1 68418.m01476 oxoglutarate/malate translocator, putative
           similar to 2-oxoglutarate/malate translocator precursor,
           spinach, SWISSPROT:Q41364
          Length = 557

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 102 FVGGLPLSQRLDWSYPSYPTYRTNYFFS 185
           FVGGL LS +L +       + T+YFF+
Sbjct: 438 FVGGLGLSWQLSFGILVLLYFYTHYFFA 465


>At2g26950.1 68415.m03232 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 375

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 112 DSHSRNDSTGLTPPTPLIEQITFFPGSYFNYFNYNFQSST 231
           DSH   + T  +PP PLI ++       F  F+++ + S+
Sbjct: 221 DSHLFGNVTYSSPPMPLIHEVENLELPSFQGFDFHEEPSS 260


>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
           family protein similar to BRCA1-associated protein 2
           [Homo sapiens] GI:3252872; contains Pfam profiles
           PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
           Zn-finger in ubiquitin-hydrolases and other protein
          Length = 461

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 176 VICSISGVGGVRPVESLREWESTD 105
           VIC + G G  +   + R WE T+
Sbjct: 231 VICGVVGCGRYKEGHARRHWEETE 254


>At2g20100.1 68415.m02348 ethylene-responsive family protein similar
           to Ethylene-regulated ER33 protein (GI:5669656)
           [Lycopersicon esculentum]; PMID: 12679534;  putative
           bHLH133 transcription factor
          Length = 362

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +1

Query: 127 NDSTGLTPPTPLIEQ-----ITFFPGSYFNYFNYNFQSST 231
           N S GL PPTPL+         F P    N+F+    SS+
Sbjct: 25  NVSRGLRPPTPLMSHEPPSTTAFIPSLLPNFFSSPTSSSS 64


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -1

Query: 194 YDPGKKVICSISGVGGVRPVESLREWESTDKERGASSIRLQIKLKKNDKSK*TFFSRQKK 15
           Y P   ++      G     E L   E   K  GAS + L++K K   +S         +
Sbjct: 189 YQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLKLKQKNWSRSSSRLLRANNR 248

Query: 14  KKNT 3
           K+++
Sbjct: 249 KEDS 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,492,935
Number of Sequences: 28952
Number of extensions: 71820
Number of successful extensions: 270
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 60
effective length of database: 10,333,440
effective search space used: 217002240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)