Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I15
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    28   8.4  
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    28   8.4  

>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 340 YMSLVLAQNKNIITYFKILPSLYHIN*FQIIYYVIFLCKYL 462
           ++ L LA+++++I  +K    + H+   +I +  IF+C YL
Sbjct: 701 HVDLALAKSEDLIRPYKGYKIVGHVVGLEIAWPAIFICSYL 741


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 340 YMSLVLAQNKNIITYFKILPSLYHIN*FQIIYYVIFLCKYL 462
           ++ L LA+++++I  +K    + H+   +I +  IF+C YL
Sbjct: 698 HVDLALAKSEDLIRPYKGYKIVGHVVGLEIAWPAIFICSYL 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,025
Number of Sequences: 37544
Number of extensions: 183911
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)