Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I14
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657...    29   2.5  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   2.5  
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331...    28   3.3  
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521...    28   4.4  
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198     27   5.8  
12_02_0298 + 17041206-17041712                                         27   7.7  
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     27   7.7  

>07_03_1482 -
           26864793-26865043,26865325-26865454,26865564-26865771,
           26867529-26867599,26867875-26867884,26869562-26870310
          Length = 472

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 27  EKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNA--KPLSGGRATVSDSGLVIKGVQKGDTG 200
           E V+VV  GQDV   CK  G     ++ S N+  K + G    +S  G     + K D  
Sbjct: 380 EAVVVVAKGQDVQGTCKY-GTRVDYILASPNSPYKFVPGSYTVISSKGTSDHHIVKVDVT 438

Query: 201 YYGCRATNEHGDKYFETLLQVN 266
               + T+E      + ++++N
Sbjct: 439 IQDKKETDEESGNQRQRVVKIN 460


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 90   PAPKVVWSHNAKPLSGGRATVSDSGLVIKGVQKGDTG 200
            PAPK V S  A   SG   + SDSG   +G    D G
Sbjct: 1206 PAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRG 1242


>05_01_0421 +
           3308692-3309070,3309199-3309339,3309776-3309897,
           3310369-3310632,3310719-3310849,3311254-3311461,
           3311564-3311632,3311722-3311799,3312448-3312621
          Length = 521

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 97  PRSS-GAITRSL*AVAGLRSVTAVWSSKAYKRVTRDTTAAELLTSTEINT 243
           PRSS G +TRS   V  L     V SSK  +R+  ++ AA   TST   T
Sbjct: 42  PRSSSGRLTRSRAKV--LEESAGVSSSKKKRRIEEESPAATTTTSTTATT 89


>03_02_0039 -
           5213699-5214775,5214815-5215093,5215300-5215776,
           5216073-5216438
          Length = 732

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 30  KVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVS 155
           + +VVKHG+ VT P +        +   H  +PLSG  A V+
Sbjct: 265 QAVVVKHGEAVTPPSRQDA--TKNITDVHKHQPLSGEHAIVA 304


>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
          Length = 683

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 3   APKYEQKPEKVIVVKHGQDVTIPCKVTGLPAP 98
           +P ++   E  + + HG D +  C  TG PAP
Sbjct: 90  SPYHDALGEHYVGILHGVDASPACSRTGAPAP 121


>12_02_0298 + 17041206-17041712
          Length = 168

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 96  PKVVWSHNAKPLSGGRATVSDSGLVIKGVQKG 191
           P   WS + KP   G A+    G++++  ++G
Sbjct: 135 PNSAWSKSGKPTEAGGASARKGGVLVRKEERG 166


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 157 TAVWSSKAYKRVTRDTTAA 213
           +A W+ K YK +T D TAA
Sbjct: 614 SAAWTEKRYKELTADVTAA 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,758
Number of Sequences: 37544
Number of extensions: 213014
Number of successful extensions: 598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)