Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I14
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    29   2.1  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    29   2.1  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    29   2.1  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    29   2.1  
At1g77520.1 68414.m09027 O-methyltransferase family 2 protein si...    27   4.9  
At1g50980.1 68414.m05731 F-box family protein contains F-box dom...    27   6.5  

>At1g55350.4 68414.m06326 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 139 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 50
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 139 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 50
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 139 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 50
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 139 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 50
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g77520.1 68414.m09027 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase GB:O23760
           [Clarkia breweri], [SP|Q00763] [Populus tremuloides]
          Length = 381

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 241 YLSPCSLVALQP*YPVSPFCTPLMTRPLSLTVA 143
           +LSPC +    P  P +P    L+ R LSL V+
Sbjct: 66  WLSPCEIACSLPTKPTNPEAPVLLDRMLSLLVS 98


>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 172 MTRPLSLTVALPPLRGFALWLQTTLGAGRPVTLHGIVTSCP 50
           +T  +  T+ +P LR   L +  T G  RP  +HG V + P
Sbjct: 164 LTNVMIFTIDVPTLR--ILSIDNTSGKSRPKGVHGFVINTP 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,976,822
Number of Sequences: 28952
Number of extensions: 167473
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)