Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I11
(627 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 235 8e-61
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 140 2e-32
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 130 3e-29
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 102 6e-21
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 101 1e-20
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 98 1e-19
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 97 2e-19
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 93 4e-18
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 93 5e-18
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 90 3e-17
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 86 8e-16
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 85 1e-15
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 85 1e-15
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 85 2e-15
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 84 2e-15
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 84 3e-15
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 79 9e-14
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 78 2e-13
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 77 3e-13
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 72 1e-11
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 65 1e-09
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 6e-08
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 55 1e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 50 5e-05
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 49 1e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 42 0.012
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 42 0.012
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 42 0.012
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.021
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.028
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 41 0.028
UniRef50_Q6MBT0 Cluster: Putative excinuclease ABC chain A; n=1;... 40 0.065
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 40 0.065
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 39 0.085
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.085
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 39 0.11
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.15
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 38 0.15
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 36 0.60
UniRef50_A5K9Y6 Cluster: Ubiquitin carboxyl-terminal hydrolase f... 36 0.60
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.79
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 36 0.79
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 36 0.79
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.1
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 36 1.1
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 35 1.8
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 34 2.4
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 34 2.4
UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus ory... 34 2.4
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 34 2.4
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 34 2.4
UniRef50_A4J6W3 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 34 3.2
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 34 3.2
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 34 3.2
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 34 3.2
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 4.2
UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep: CG... 33 5.6
UniRef50_A0BWL3 Cluster: Chromosome undetermined scaffold_132, w... 33 5.6
UniRef50_A5K8U4 Cluster: Putative uncharacterized protein; n=3; ... 33 7.4
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 33 7.4
UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like p... 32 9.8
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 32 9.8
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
UniRef50_Q2GZ27 Cluster: Putative uncharacterized protein; n=1; ... 32 9.8
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 9.8
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 235 bits (574), Expect = 8e-61
Identities = 114/137 (83%), Positives = 123/137 (89%)
Frame = -1
Query: 570 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 391
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 390 PKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 211
P+RLFEGNA LDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 210 ILIRQRHIRVRKQVVNI 160
+LIRQRHIRVRKQVVNI
Sbjct: 128 VLIRQRHIRVRKQVVNI 144
Score = 83.8 bits (198), Expect = 3e-15
Identities = 39/47 (82%), Positives = 43/47 (91%), Gaps = 1/47 (2%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG-GATNDEEED 14
IVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQGG GA +DEEED
Sbjct: 148 IVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 140 bits (339), Expect = 2e-32
Identities = 69/135 (51%), Positives = 93/135 (68%)
Frame = -1
Query: 564 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 385
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 384 RLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 205
RL EG A L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 204 IRQRHIRVRKQVVNI 160
IR + I+V KQVV++
Sbjct: 129 IRGKMIKVGKQVVDV 143
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 130 bits (314), Expect = 3e-29
Identities = 69/127 (54%), Positives = 84/127 (66%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
+R+FEG A L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 207 LIRQRHI 187
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 102 bits (245), Expect = 6e-21
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 400
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 399 EKDPKRLFEG-NAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 223
+ +FE + L +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLGPDADIDNVLALKVPAQLERRLQTLVYRKGLARSP 123
Query: 222 HHARILIRQRHIRVRKQVVNI 160
AR L+ HI + + V +
Sbjct: 124 KQARQLVTHGHIAIGGRRVTV 144
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 101 bits (243), Expect = 1e-20
Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 396 --KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 223
+ R+ + + +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSENADIDDVLALKVEQQLDRRLQTQVYRRGFARSP 123
Query: 222 HHARILIRQRHIRVRKQVVNI 160
AR I HI + + V I
Sbjct: 124 KQARQFITHGHIAIGGRRVTI 144
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 98.3 bits (234), Expect = 1e-19
Identities = 48/135 (35%), Positives = 81/135 (60%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
K + ++ L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 207 LIRQRHIRVRKQVVN 163
LI +HI+V+ Q+VN
Sbjct: 130 LIMHKHIQVKNQIVN 144
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 97.5 bits (232), Expect = 2e-19
Identities = 57/142 (40%), Positives = 84/142 (59%), Gaps = 7/142 (4%)
Frame = -1
Query: 564 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP- 388
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 387 ----KRLFEGNAXXXXXXXXXXLDEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKS 226
+ L D++++ L+ VL L I +LERRLQ +VF AGLAKS
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKS 126
Query: 225 IHHARILIRQRHIRVRKQVVNI 160
+HHAR+LI R I ++ Q+V++
Sbjct: 127 VHHARLLIGGRCISIKDQIVDV 148
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 93.5 bits (222), Expect = 4e-18
Identities = 59/140 (42%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 400
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 399 EKDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 220
D + L +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 219 HARILIRQRHIRVRKQVVNI 160
AR LI HI V + V +
Sbjct: 123 QARQLITHGHITVNGRRVTV 142
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 93.1 bits (221), Expect = 5e-18
Identities = 54/134 (40%), Positives = 76/134 (56%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
+ E L + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 207 LIRQRHIRVRKQVV 166
LI HI V +VV
Sbjct: 126 LIVHGHIAVNGRVV 139
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 90.2 bits (214), Expect = 3e-17
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Frame = -1
Query: 546 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 373
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 372 GNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 193
+++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 192 HIRV 181
H+ V
Sbjct: 132 HVAV 135
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 85.8 bits (203), Expect = 8e-16
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LE 400
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL +
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 399 EKDPKRLFEGN-----AXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 235
+ EG+ + + +D +L LK E+ LERRLQTQV + GL
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGL 123
Query: 234 AKSIHHARILIRQRHIRVRKQVVNI 160
A+++ AR I HI + + I
Sbjct: 124 ARTVIQARQFITHGHIAINGRKATI 148
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 85.4 bits (202), Expect = 1e-15
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 396 ----KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAK 229
+ + ++ KL+ VL LK++D +ERRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFAN 123
Query: 228 SIHHARILIRQRHIRVRKQVVNI 160
SI AR I HI + + + +
Sbjct: 124 SIKQARQFIVHGHISLNGRKITV 146
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 85.0 bits (201), Expect = 1e-15
Identities = 48/132 (36%), Positives = 72/132 (54%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 396 KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 217
+ R +++ LD +LGL E++LERRLQT V+K GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 216 ARILIRQRHIRV 181
AR LI HI +
Sbjct: 122 ARQLIVHGHIAI 133
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 84.6 bits (200), Expect = 2e-15
Identities = 47/141 (33%), Positives = 84/141 (59%)
Frame = +1
Query: 154 RRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHLSLKTALQEVLNLQTEHIIQFHLFLIK 333
R +V LL ++N+ L DQD+ +++ L +T L L L+++ QE+ NLQ++ IIQ L +
Sbjct: 47 RWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQ 106
Query: 334 HSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLL 513
++ +Q++ SI F+QSL +L + QQ +G +D + ++ +F+LV +T+ + LQ
Sbjct: 107 DTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSLVLQTVFTSQLQFG 166
Query: 514 IKTRLLERTSRSYVCFGKYRW 576
++T R+ S V G W
Sbjct: 167 VQTSGFVRSLWSRVSLGVSSW 187
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 84.2 bits (199), Expect = 2e-15
Identities = 54/110 (49%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Frame = -1
Query: 468 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNAXXXXXXXXXXLDEKQMK------L 310
EVWRVK+TL +IRKA ELL L EKDP+ LFE N L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 309 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDI 149
Score = 59.3 bits (137), Expect = 7e-08
Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = -3
Query: 160 SFVIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG-GATNDEEED 14
+F V LDS KH DF GGG PG VKRKN++KG+GG GA +DEEED
Sbjct: 150 AFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKKGRGGAGAGDDEEED 199
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 83.8 bits (198), Expect = 3e-15
Identities = 50/138 (36%), Positives = 73/138 (52%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 396 KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 217
++ E L ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 216 ARILIRQRHIRVRKQVVN 163
AR I HI V + +N
Sbjct: 122 ARQFIVHGHIAVNGKKIN 139
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 79.0 bits (186), Expect = 9e-14
Identities = 46/133 (34%), Positives = 69/133 (51%)
Frame = -1
Query: 579 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 400
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 399 EKDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 220
G L E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 219 HARILIRQRHIRV 181
AR + H+ V
Sbjct: 117 QARQFVSHGHVTV 129
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 78.2 bits (184), Expect = 2e-13
Identities = 46/128 (35%), Positives = 71/128 (55%)
Frame = -1
Query: 546 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 367
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 366 AXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 187
+ + +LD VL L ++D LERRLQT + + GLAK++ AR I HI
Sbjct: 70 ERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHI 129
Query: 186 RVRKQVVN 163
V +VV+
Sbjct: 130 MVNGEVVD 137
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 77.4 bits (182), Expect = 3e-13
Identities = 42/133 (31%), Positives = 68/133 (51%)
Frame = -1
Query: 561 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 382
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L + D
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGM---DIDE 65
Query: 381 LFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 202
+ KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 66 RADKEKELLDHLVRAGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 201 RQRHIRVRKQVVN 163
HI + + +N
Sbjct: 126 VHGHITLNGKKIN 138
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 71.7 bits (168), Expect = 1e-11
Identities = 47/139 (33%), Positives = 69/139 (49%)
Frame = -1
Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 396 KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 217
+ +R L K LD VL L++ D L RRLQT V K + +
Sbjct: 64 EVRER---KEPVLLRSLARIGLVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 216 ARILIRQRHIRVRKQVVNI 160
AR + HI + +VV I
Sbjct: 121 ARQAVVHGHITISDRVVTI 139
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 65.3 bits (152), Expect = 1e-09
Identities = 45/134 (33%), Positives = 67/134 (50%)
Frame = -1
Query: 561 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 382
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSH--- 65
Query: 381 LFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 202
+ + + E L+ VL + FLERRLQT VFK GLA++I AR LI
Sbjct: 66 --DTSDKIIARMVKFGILENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
Query: 201 RQRHIRVRKQVVNI 160
I V + V+I
Sbjct: 124 THGFIAVNMKRVSI 137
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = -1
Query: 465 VWRVKYTLARIRKAARELLTLEEKDPKRLF 376
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/46 (60%), Positives = 32/46 (69%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
IVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 38 IVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 82
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = -1
Query: 330 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 223
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +1
Query: 364 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKTRLLERTS 543
S+ + +LR+LL++ +Q + + + L AP +LVA+ L+DDLQL ++ LLERTS
Sbjct: 136 SLTLEDALRVLLIKRKQHASGVAELVKGELHAPQLSLVAKAELTDDLQLGVEAILLERTS 195
Query: 544 R 546
R
Sbjct: 196 R 196
Score = 33.9 bits (74), Expect = 3.2
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +2
Query: 158 GMFTTCLRTRICLCLIKMRA*WIDFARPALNT 253
G FT CL TRI IK RA D ARP+L T
Sbjct: 78 GTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 35
+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 27 LVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 409
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 41.9 bits (94), Expect = 0.012
Identities = 29/111 (26%), Positives = 47/111 (42%)
Frame = -1
Query: 498 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXLDEKQ 319
I +YGLR++ E + + ++RK A L L+E DP R + K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
KL + + F ERRL + + + S A + H+R+ +VV
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVV 140
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 41.9 bits (94), Expect = 0.012
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -1
Query: 300 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNI 169
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 41.9 bits (94), Expect = 0.012
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -1
Query: 330 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNI 124
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 41.1 bits (92), Expect = 0.021
Identities = 30/115 (26%), Positives = 50/115 (43%)
Frame = -1
Query: 510 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXL 331
EL+++ Y L+ + + R +R+ AR L L E+D R+ +A L
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRV-RASAALLDKLYALGL 88
Query: 330 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
+ L+ + F RRL T + K +A+ + A + Q H+RV VV
Sbjct: 89 VPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVV 143
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.028
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = -3
Query: 148 VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEE 20
VR++ K IDFS GGGRPGRVKRK L+ A D++
Sbjct: 152 VRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVAGEDDD 194
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 40.7 bits (91), Expect = 0.028
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNI
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNI 130
>UniRef50_Q6MBT0 Cluster: Putative excinuclease ABC chain A; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative excinuclease ABC chain A - Protochlamydia
amoebophila (strain UWE25)
Length = 937
Score = 39.5 bits (88), Expect = 0.065
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 127 ACRSPGGR*RRNVHHLLADTNMPLSDQDAGMMD*L-RKTSLEHLSLKTALQEVLNLQTEH 303
AC GGR + N ++ D N PL DQ ++D L +K + SL AL ++LNL E+
Sbjct: 282 ACNGLGGREQVNPSQVIFDENEPLLDQIQVILDHLPKKAAYSFKSLLKALWKILNLSEEN 341
Query: 304 IIQ 312
I+
Sbjct: 342 FIK 344
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 39.5 bits (88), Expect = 0.065
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -1
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNV 129
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 39.1 bits (87), Expect = 0.085
Identities = 27/111 (24%), Positives = 47/111 (42%)
Frame = -1
Query: 498 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXLDEKQ 319
+ +YG+ ++RE+ + T+ +IR L L + + R+ +D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
LD + L L RRL + K + + I ++Q H+RV VV
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVV 142
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 39.1 bits (87), Expect = 0.085
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1
Query: 324 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNI
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNI 146
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 38.7 bits (86), Expect = 0.11
Identities = 41/130 (31%), Positives = 58/130 (44%)
Frame = -1
Query: 549 TPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 370
TPR ++ RL EL +G+ G +R ++ L R RK + L LEEK R G
Sbjct: 7 TPRFKRQR-RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG 64
Query: 369 NAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 190
+K ++V L + LE+RL VF+ G A SI AR L+
Sbjct: 65 -LREEQFRRLINKAKKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGK 121
Query: 189 IRVRKQVVNI 160
+ V + VNI
Sbjct: 122 VLVNGKKVNI 131
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.15
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -3
Query: 142 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 35
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 38.3 bits (85), Expect = 0.15
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = -1
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
V G + LERRL VF+AG A S AR ++R +HI + + V+I
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDI 135
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 36.3 bits (80), Expect = 0.60
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 315 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+I
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDI 246
>UniRef50_A5K9Y6 Cluster: Ubiquitin carboxyl-terminal hydrolase family
2, putative; n=2; Plasmodium|Rep: Ubiquitin
carboxyl-terminal hydrolase family 2, putative -
Plasmodium vivax
Length = 3000
Score = 36.3 bits (80), Expect = 0.60
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = -3
Query: 274 GAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVIVRLDSGKHIDFSLKSPFG 95
G P + SG G SC +PS + QAGG+ S + + +G+H+ S+ S
Sbjct: 2351 GEPVNRSGRSGRSCRSSPSSRSSRSSRGSGWKQAGGKTSDGRIPI-NGEHVSDSVYSYHK 2409
Query: 94 GGRPGRVKRKNLRKGQGGGATNDEEED 14
G + +N G G D + D
Sbjct: 2410 NRGDGGARDENTAAGAANGTCEDTDND 2436
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 35.9 bits (79), Expect = 0.79
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -1
Query: 324 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNI
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNI 107
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 35.9 bits (79), Expect = 0.79
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
G + LE RL +F+ G+A +I AR L+ RHI + V+I
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDI 121
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 35.9 bits (79), Expect = 0.79
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 282 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+ LERRL T +F+ A S +AR LI HI + +VN+
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNV 147
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 35.5 bits (78), Expect = 1.1
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = -1
Query: 510 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 334
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R E +
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRT-EMSGLLLEKLYVLG 86
Query: 333 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
L + L+ + F RRL + + +++++ HA +I H+RV VV
Sbjct: 87 LIPTKWDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVV 142
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 35.5 bits (78), Expect = 1.1
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = -1
Query: 327 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNI
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNI 129
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 34.7 bits (76), Expect = 1.8
Identities = 29/94 (30%), Positives = 40/94 (42%)
Frame = -1
Query: 441 ARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRL 262
A +K + + LEEK RL G + K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSERQMLRYM----RKARRSKGSTGLALLQMLEMRL 94
Query: 261 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
VF+ G+A +I AR L+ HI V + V I
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTI 128
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 34.3 bits (75), Expect = 2.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 303 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
+ G + LE RL V++ G++ + AR L+ +HI V ++VNI
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNI 128
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 34.3 bits (75), Expect = 2.4
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
G + LE RL +F+ G+A +I AR L+ RHI V ++V+I
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDI 111
>UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 950
Score = 34.3 bits (75), Expect = 2.4
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +3
Query: 156 KECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPVSSVSHQA 335
++ + PA E GHD + + + P D +P S +H P S+ H
Sbjct: 564 EQVNTPAPQPEQPKDHEESGHDNQSHEIESPKPTGADSSPHEDPSREDSHGPSSTPVHGQ 623
Query: 336 LRP*PDDVVEHCLQTIS*DPS--PRVSTVHGQP 428
P D + + ++ S + S P + VHGQP
Sbjct: 624 PEPTGVDGIHNQEESSSHEDSHGPSSTPVHGQP 656
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 34.3 bits (75), Expect = 2.4
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -1
Query: 276 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
LE R+ + ++++G+ +I AR LI +H+ V ++VNI
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNI 129
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 34.3 bits (75), Expect = 2.4
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
G + +LERRL V++ G A + AR L+ H+ V + VNI
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNI 134
>UniRef50_A4J6W3 Cluster: Putative uncharacterized protein; n=1;
Desulfotomaculum reducens MI-1|Rep: Putative
uncharacterized protein - Desulfotomaculum reducens MI-1
Length = 239
Score = 33.9 bits (74), Expect = 3.2
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Frame = +1
Query: 130 CRSPGGR*RRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHL-----SLKTALQEVLNLQ 294
C PGG+ + ++HLL T++PL +Q A ++ TS E + L T++ LNL+
Sbjct: 162 CLLPGGQPKNILYHLLKATDLPLFNQKAEII--TVATSPEFIPRQADPLVTSVGRYLNLE 219
Query: 295 T---EHIIQFHL 321
T E+I+Q HL
Sbjct: 220 TSMLENILQQHL 231
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 33.9 bits (74), Expect = 3.2
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -1
Query: 276 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
LE RL +F G+A +I AR L+ RHI V +V+I
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDI 92
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 33.9 bits (74), Expect = 3.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -1
Query: 327 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 181
E+ + + G + + LE RL V +AG A++I AR L+ RHI V
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILV 124
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 33.9 bits (74), Expect = 3.2
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
GL + LE RL V++AG A ++ AR L+ H++V + V I
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTI 127
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 33.9 bits (74), Expect = 3.2
Identities = 25/117 (21%), Positives = 47/117 (40%)
Frame = -1
Query: 513 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 334
++ +++ Y ++N+ + + IR+ A +L L DP R
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 333 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 163
L K D + + RRL + + +A++I A I Q H+RV ++N
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLIN 144
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 4.2
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 531 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 379
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
>UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep:
CG33196-PB - Drosophila melanogaster (Fruit fly)
Length = 23015
Score = 33.1 bits (72), Expect = 5.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 283 GLLGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSC 182
GL G P+S G G+ C+V+ CP+ Y C
Sbjct: 9018 GLSGDPTSVIGCHGYECQVDADCPNSKACMGYRC 9051
>UniRef50_A0BWL3 Cluster: Chromosome undetermined scaffold_132, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_132, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1572
Score = 33.1 bits (72), Expect = 5.6
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 235 KTSLEHLSLKTALQEVLNLQTEHIIQ-FHLFLIKHSDPNQTT**SIAFKQSLRILLLECQ 411
+ L H L T LQE+ NL E I++ H F+ Q+ + L + L CQ
Sbjct: 999 REKLHHSELTTLLQELQNLINEPIVESLHGFVSLIQCVYQSE--YADLNRVLTLFQLICQ 1056
Query: 412 QFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIK 519
Q GS ++ + L+A+ LSD L++L++
Sbjct: 1057 QGAGSSSEELINSNLSKAMDLLAQNNLSDSLEILLE 1092
>UniRef50_A5K8U4 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1257
Score = 32.7 bits (71), Expect = 7.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 211 HLDQT--EAYSCPQAGGEHSFVIVRLDSGKHID--FSLKSPFGGGRPGRVKRKNLRKGQG 44
HL+ T EA PQ GE V LD + + + +P GGG + K +N +K +
Sbjct: 633 HLESTNGEAEETPQVSGEKKLVDNFLDETEEMKNIIGMATPLGGGEKTQKKDQNGKKIES 692
Query: 43 GGATNDEEE 17
G + +E
Sbjct: 693 GSGKKNPDE 701
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 32.7 bits (71), Expect = 7.4
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
G+ LERRL V++ GLA + AR L+ HI V + V+I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDI 129
>UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to EGF-like protein -
Strongylocentrotus purpuratus
Length = 1686
Score = 32.3 bits (70), Expect = 9.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 262 SDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGE 164
SDSG C+V S P DQ +YS P GG+
Sbjct: 968 SDSGQASCLCDVGFSGPTCDQVSSYSIPMFGGD 1000
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 32.3 bits (70), Expect = 9.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 297 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 160
G + LE RL VF+ G+A +I AR L+ HI V + V+I
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDI 139
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 32.3 bits (70), Expect = 9.8
Identities = 23/116 (19%), Positives = 50/116 (43%)
Frame = -1
Query: 513 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 334
++++ IG +GL+ K E +A+ + +E+ L ++DP + +
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 333 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
+D KQ ++ + F RR + K A+ + A L+ H+R+ + +
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETI 142
>UniRef50_Q2GZ27 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 455
Score = 32.3 bits (70), Expect = 9.8
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -3
Query: 283 GLLGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVIVRLDSGKHIDFSLKS 104
GL G S+ G N + P++ S AG H +G D + S
Sbjct: 292 GLFGGSSARYGAHNKYNYANSNSPYVFSGAGGSVAAAGTSHHHH--HNHAGSRRDANESS 349
Query: 103 PFGGGRP-GRVKRKNLRKGQGGG 38
GGG P G ++ KNLR G G
Sbjct: 350 LVGGGNPHGNIRLKNLRSPSGKG 372
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 9.8
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -1
Query: 606 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 430
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 429 K 427
+
Sbjct: 335 R 335
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,426,744
Number of Sequences: 1657284
Number of extensions: 11487650
Number of successful extensions: 34616
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 33245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34556
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -