Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I11
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   210   2e-55
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   209   2e-55
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    37   0.002
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   0.73 
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   2.2  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.9  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   5.1  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   9.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.0  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  210 bits (512), Expect = 2e-55
 Identities = 102/139 (73%), Positives = 113/139 (81%)
 Frame = -1

Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 396 KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 217
           KDPKRLFEGNA          LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 216 ARILIRQRHIRVRKQVVNI 160
           AR+LI QRHIRV KQ+VN+
Sbjct: 125 ARVLIFQRHIRVGKQIVNV 143



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 29/46 (63%), Positives = 35/46 (76%)
 Frame = -3

Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
           +VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q GG   + EE+
Sbjct: 147 VVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGGEGEEAEEE 192


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  209 bits (511), Expect = 2e-55
 Identities = 102/139 (73%), Positives = 113/139 (81%)
 Frame = -1

Query: 576 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 397
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 396 KDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 217
           KDPKRLFEGNA          LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 216 ARILIRQRHIRVRKQVVNI 160
           AR+LI QRHIRV KQ+VN+
Sbjct: 125 ARVLIFQRHIRVGKQIVNV 143



 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 29/45 (64%), Positives = 34/45 (75%)
 Frame = -3

Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEE 17
           +VRLD+ KHIDF+L SP+GGGRPGR KRK LR  +GG     EEE
Sbjct: 147 VVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGEGEEAEEE 191


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 26/116 (22%), Positives = 45/116 (38%)
 Frame = -1

Query: 513 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 334
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N           
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 333 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
           L  K    D      +     RRL   + K  +++ +  A  LI Q H+RV   V+
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVI 143


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 364 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 492
           SI F+ S RIL     Q T  LT  S     + HF ++  TIL
Sbjct: 18  SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 116 EVNVLAGVQADDDEGMF 166
           E+ VLAG +ADD EG F
Sbjct: 397 EIEVLAGGKADDSEGFF 413


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 262 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 438
           KT++ E+ N    H+  +F   ++K  +  Q         QSL     E   FT SL   
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246

Query: 439 SERVLDAPHFTLVAETILSDDLQLL 513
           +E V+D    T +++ +L  D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 187
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 264 DGAPRSPQSSNRAHNPVSSVSHQALRP 344
           DGA  S Q+   AHNP +SVS + +RP
Sbjct: 90  DGA--SSQNDAFAHNPSTSVSVELVRP 114


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 256 SGVQGWSCEVNPSCP 212
           +G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -1

Query: 603 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 445
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,809
Number of Sequences: 5004
Number of extensions: 44080
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)