Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_I11
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 185 3e-47
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 185 3e-47
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 184 7e-47
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 130 9e-31
07_03_1357 - 25982861-25983068,25983354-25983361 55 4e-08
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.3
03_06_0653 - 35305279-35306163 30 1.7
12_02_0441 + 19115990-19116478 29 2.3
07_03_0366 + 17321948-17322331 29 2.3
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 4.0
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 5.3
03_02_0167 - 6088818-6089870 28 5.3
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 5.3
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 28 7.0
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 9.2
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 185 bits (450), Expect = 3e-47
Identities = 88/136 (64%), Positives = 107/136 (78%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
+R+FEG A L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 207 LIRQRHIRVRKQVVNI 160
LIRQRHIRV +Q+VNI
Sbjct: 130 LIRQRHIRVGRQIVNI 145
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG +EE++
Sbjct: 149 MVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 194
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 185 bits (450), Expect = 3e-47
Identities = 88/136 (64%), Positives = 107/136 (78%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
+R+FEG A L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
Query: 207 LIRQRHIRVRKQVVNI 160
LIRQRHIRV +Q+VNI
Sbjct: 346 LIRQRHIRVGRQIVNI 361
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 38
+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 365 MVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 184 bits (447), Expect = 7e-47
Identities = 88/134 (65%), Positives = 106/134 (79%)
Frame = -1
Query: 561 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 382
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 381 LFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 202
+FEG A L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 201 RQRHIRVRKQVVNI 160
RQRHIRV +Q+VNI
Sbjct: 155 RQRHIRVGRQIVNI 168
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG +EE++
Sbjct: 172 MVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 217
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 130 bits (314), Expect = 9e-31
Identities = 69/127 (54%), Positives = 84/127 (66%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
+R+FEG A L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 207 LIRQRHI 187
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/46 (60%), Positives = 32/46 (69%)
Frame = -3
Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
IVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 15 IVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 59
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -1
Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYG 484
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 97 GGGRPGRVKRKNLRKGQGGG 38
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>03_06_0653 - 35305279-35306163
Length = 294
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 172 GGEHSFVIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 38
GG+ S V L K++ L GG+P R +R +R GGG
Sbjct: 7 GGQPSCAAVSLS--KYLQRKLWKRINGGKPRRKRRPEVRSASGGG 49
>12_02_0441 + 19115990-19116478
Length = 162
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -3
Query: 109 KSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
K+ GGG GR K+ KG+GGG ++EEE+
Sbjct: 124 KNGRGGGGGGRKKK---GKGKGGGGEDEEEEE 152
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 133 GKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 23
G ++ +S GGG R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 288 IEDFLERRLQTQVFKAGLAKSIHHAR 211
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 256 SGVQGWSCEVNPSCPHLDQTEAY 188
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>03_02_0167 - 6088818-6089870
Length = 350
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 109 KSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
K P GGG GR + G+ GG ++EEED
Sbjct: 103 KLPAGGGHRGR----QVLSGRSGGGVDEEEED 130
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 513 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 391
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 94 GGRPGRVKRKNLRKGQGGGATNDEEE 17
GGRP + K + G+GG T DEEE
Sbjct: 169 GGRPAPEREKE-KAGRGGPLTGDEEE 193
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -1
Query: 534 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 400
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,469
Number of Sequences: 37544
Number of extensions: 353099
Number of successful extensions: 1200
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -