Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I11
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             229   2e-60
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_12481| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_20253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   7.1  
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)              28   7.1  
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  229 bits (559), Expect = 2e-60
 Identities = 112/137 (81%), Positives = 120/137 (87%)
 Frame = -1

Query: 570 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 391
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 390 PKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 211
           P+RLFEGNA          LDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 210 ILIRQRHIRVRKQVVNI 160
           +LIRQRHIRVRKQ+VN+
Sbjct: 125 VLIRQRHIRVRKQLVNV 141



 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = -3

Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 14
           +VRLDS KHIDFSL SP+GGGRPGRVKRKN++KGQGG    DE+ED
Sbjct: 145 VVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQGGSGGEDEDED 190


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 25/116 (21%), Positives = 49/116 (42%)
 Frame = -1

Query: 513 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 334
           +E+K++ +Y ++ + +  +       I+  A ++  L+ KDP R+ E             
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRV-EATEQILEKLHNMG 86

Query: 333 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 166
           L   +  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+
Sbjct: 87  LISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVI 142


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -1

Query: 543 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 385
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_12481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 241 WSCEVN--PSCPHLDQTEAYSCPQAGGEHSFVIVRLDSGKHIDFSLKSPFGGGR 86
           W  ++   P+ P   Q E   CP   G+  F   R +  +H+D      F  GR
Sbjct: 152 WPSDIKTYPALPSSTQKEIGICPGVAGKSPFHFARKNHSEHLDTKPSIVFCSGR 205


>SB_20253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 462 TLHACCG---DHTLR*SSTPDQDAPSRTDVEELRMFW 563
           TL  CCG   D T +  S+PD   PSR       ++W
Sbjct: 4   TLETCCGYEYDRTRKSMSSPDFQGPSRAHRTPQEVWW 40


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 528 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 385
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
          Length = 476

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 240 QP*TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS 386
           +P TP ++  +   P +SN +HN ++      LR    + V HC+  ++
Sbjct: 408 EPGTPGAKGESGGPPFASNASHNELNRTLCHTLRHSGSNTVTHCVTRVT 456


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 203 SDRGIFVSASRW*TFLRHRPPGLRQAH*LLSEVA 102
           S  G+    SR+ TFLR  PP  +QA  L+  VA
Sbjct: 175 SSSGVLSDKSRYKTFLRVVPPDTKQAKTLVKLVA 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,809
Number of Sequences: 59808
Number of extensions: 370654
Number of successful extensions: 1067
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)