Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_I11
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   200   8e-52
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   197   6e-51
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    31   0.63 
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    31   0.63 
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.3  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    28   4.4  
At5g09720.1 68418.m01126 magnesium transporter CorA-like family ...    28   5.8  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  200 bits (487), Expect = 8e-52
 Identities = 97/145 (66%), Positives = 116/145 (80%)
 Frame = -1

Query: 594 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 415
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 414 LLTLEEKDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 235
           LLTL+EK+P+R+FEG A          LDE Q KLDYVL L +E+FLERRLQT VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 234 AKSIHHARILIRQRHIRVRKQVVNI 160
           AKSIHHAR+LIRQRHIRV +Q+VNI
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNI 145



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 4/49 (8%)
 Frame = -3

Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR----KGQGGGATNDEEE 17
           +VR++S KH+DFSL SPFGGGRPGRVKR+N R    K  GG    D+EE
Sbjct: 149 MVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGDGDEDDEE 197


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  197 bits (480), Expect = 6e-51
 Identities = 92/136 (67%), Positives = 112/136 (82%)
 Frame = -1

Query: 567 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 388
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 387 KRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 208
           +R+FEG A          LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 207 LIRQRHIRVRKQVVNI 160
           LIRQRHIRV KQ+VNI
Sbjct: 130 LIRQRHIRVGKQLVNI 145



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 33/50 (66%), Positives = 38/50 (76%), Gaps = 5/50 (10%)
 Frame = -3

Query: 151 IVRLDSGKHIDFSLKSPFGGGRPGRVKRKN----LRKGQGGG-ATNDEEE 17
           +VRLDS KHIDF+L SPFGGGRPGRVKR+N     +K  GGG A  D+EE
Sbjct: 149 MVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGGDADGDDEE 198


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 276 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 416
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 276 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 416
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 561 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 445
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 270 APRSPQSSNRAHNPVSSVSH 329
           A RSP+ S++ HNP+SS  H
Sbjct: 93  ASRSPKKSHKHHNPLSSKRH 112


>At5g09720.1 68418.m01126 magnesium transporter CorA-like family
           protein (MRS2-8) contains Pfam profile PF01544:
           CorA-like Mg2+ transporter protein
          Length = 397

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -3

Query: 205 DQTEAYSCPQAGGEHSFVIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ-GGGATN 29
           D  E Y   +  G  S  I   DSG+HI++   SP  G +  R K   +R     G   N
Sbjct: 249 DMAELYLSRKLAGASSPAI---DSGEHINWYPTSPTIGAKISRAKSHLVRSATVRGDDKN 305

Query: 28  DEEE 17
           D EE
Sbjct: 306 DVEE 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,258,623
Number of Sequences: 28952
Number of extensions: 253645
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)